Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467711.1:4919727-4924777[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 28 7.1 1.9 2 20 165 183 164 187 0.80

2 10 0.0042 1 11.6 0.3 1 23 193 216 193 216 0.97

3 10 2.3e-07 5.6e-05 25.0 0.9 1 23 222 244 222 244 0.97

4 10 4.1e-08 1e-05 27.3 2.9 1 23 250 272 250 272 0.98

5 10 3.4e-07 8.5e-05 24.4 0.1 1 23 278 300 278 300 0.97

6 10 8.7e-06 0.0021 20.0 3.0 1 23 306 328 306 328 0.98

7 10 6e-06 0.0015 20.5 1.0 1 23 431 453 431 453 0.98

8 10 2e-06 0.0005 22.0 1.0 1 23 459 481 459 481 0.98

9 10 6.6e-07 0.00016 23.6 2.2 1 23 487 509 487 509 0.99

10 10 1.5e-06 0.00037 22.4 1.1 2 23 516 537 515 537 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	28	7.1	1.9	2	20	165	183	164	187	0.80
2	10	0.0042	1	11.6	0.3	1	23	193	216	193	216	0.97
3	10	2.3e-07	5.6e-05	25.0	0.9	1	23	222	244	222	244	0.97
4	10	4.1e-08	1e-05	27.3	2.9	1	23	250	272	250	272	0.98
5	10	3.4e-07	8.5e-05	24.4	0.1	1	23	278	300	278	300	0.97
6	10	8.7e-06	0.0021	20.0	3.0	1	23	306	328	306	328	0.98
7	10	6e-06	0.0015	20.5	1.0	1	23	431	453	431	453	0.98
8	10	2e-06	0.0005	22.0	1.0	1	23	459	481	459	481	0.98
9	10	6.6e-07	0.00016	23.6	2.2	1	23	487	509	487	509	0.99
10	10	1.5e-06	0.00037	22.4	1.1	2	23	516	537	515	537	0.97

Sequence Information

Coding Sequence: ATGGAGTCCTGGAGAAGTTATGCAACTATTTGTAGGTTGTGTTTACAGAAAGACGGCTTTATGTTGGGCATTTTTAATCATATTCAAGGCAAGGACAGAAGCATTTACAAAAAGATTATCGATTGTACAGCACTACAGATTTCTCGTGGAGATGGATTGCCCAACGTTATTTGCCATAGATGTTTATACAAGATTGAATTTTGTCTTGAATTTCGTCAACTATGTTTCATGTCGGATGCGACGCTTCGCCAGCTAGCAGGAGCATCTAAAGAAAATGGATCGGATAGCGGGAACCCTCAAATACCTCTTTATGATCAACTAGCCACCACAGGCAGTGATGAAAATGTAGTAATGGTGGTAGATCCGCATGCGTTTGATTACGAATCAGAGTATGAAACTGACAAAGAAGCGATAATCAGCGACATTGAAAATGGAGAATCCAACGACGTCGAGCCCGAACCTGAACAAGAACAAGAGGGTAGAGGGGTTACCATGTGTAAATATTGCGATCACGCGTTTACCGACAGCGCAGAGTGTTACAATCATGAAGTTAGCGCTCACAATAGCGAGACTCCTTACAATTGTGCTACTTGTTTTATGAGCTTCGCCGATAGGGTTTTGTATTCTGCCCATTTGAAGAGCGTACACAAGAACGATAAGCCATATAATTGCCCACAATGCAACAGAACATTTGCCAGacgATCTGACTTAAGGAAGCACACCATAGTCCATACTGGCGTGAAACCGTTCACCTGCTCCATCTGCTTCAAATCATTTTCAAGAAATACGAATCTATCGAAGCACATGCGCATCCATTCGAGCACGAAACCATTCGTTTGTCCCAAATGCCCTAAAACGTTTACATCGAAAGCGGAGTTGTCTCGTCACGCCATCATCCACAACGGACAGAAACCGTTTAGTTGCAATTATTGCAAATTGAGTTTTGGCAGACGGGACAAGTTGCAGAGGCACGAGCGACGGCATTTTCCGCAGGAAAACTCCGAGGACAAATCTCAGGAACTGCAATTGATGAGGGAAACTCTCTCGATTTTCACCAACGTCAAGAATGAAGTAAAACGCGAGGAATCTTCTGAAAATATGGTGATAACGTTGGATCCGTTCAACCACAACGATTACCATGCAGAATCGACGCCCCAGCGAGGAGACACCTCGGAAAACGAACCACAAAACGATTTCATTGCCGCAGAAAGAGTTGAGGAAGACATCAAAAACGAATCTATTTCCGAAGAAAAATATACATCGACGCTGGAATCCAGCAAGGACAAACCGTTCAGGTGTTCGCAGTGCACAAAACGATTCTCCAAAGCGGAAAATCTACTGTCACACCAGGCCATCCATTCTGGAAACAGACCGTTCAGTTGCTATGTTTGTAACAAATCTTTCATTAGAAAGAGGGAGTTGGACAGGCACATCGCTACCCATTCGGGCATGAAACCGTTCAAATGTCCAAGATGCAGCAAAAGTTTCGGACGCAAAGATAAGATGATGCGGCACATGCGCATTCACGACGGAAATAAAACTATCAGTTGCAAGATATGCGGAAGCACGTACAACAGAAGAGATAGTCTTCAGCAGCACATGAAGACTCATTCGACCAAAGAGAGTGTAGACACCGACAATGGACTAGATTAG
Protein Sequence: MESWRSYATICRLCLQKDGFMLGIFNHIQGKDRSIYKKIIDCTALQISRGDGLPNVICHRCLYKIEFCLEFRQLCFMSDATLRQLAGASKENGSDSGNPQIPLYDQLATTGSDENVVMVVDPHAFDYESEYETDKEAIISDIENGESNDVEPEPEQEQEGRGVTMCKYCDHAFTDSAECYNHEVSAHNSETPYNCATCFMSFADRVLYSAHLKSVHKNDKPYNCPQCNRTFARRSDLRKHTIVHTGVKPFTCSICFKSFSRNTNLSKHMRIHSSTKPFVCPKCPKTFTSKAELSRHAIIHNGQKPFSCNYCKLSFGRRDKLQRHERRHFPQENSEDKSQELQLMRETLSIFTNVKNEVKREESSENMVITLDPFNHNDYHAESTPQRGDTSENEPQNDFIAAERVEEDIKNESISEEKYTSTLESSKDKPFRCSQCTKRFSKAENLLSHQAIHSGNRPFSCYVCNKSFIRKRELDRHIATHSGMKPFKCPRCSKSFGRKDKMMRHMRIHDGNKTISCKICGSTYNRRDSLQQHMKTHSTKESVDTDNGLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -