Aaln027273.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467712.1:11714084-11716979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.2e-05 0.013 17.6 1.6 1 23 109 131 109 131 0.98 2 16 0.79 1.9e+02 4.4 1.0 2 23 137 158 137 158 0.91 3 16 0.0016 0.4 12.9 6.2 1 21 164 184 164 186 0.95 4 16 2.9e-06 0.00072 21.5 1.9 1 23 192 214 192 214 0.98 5 16 0.072 18 7.7 2.4 1 23 222 244 222 244 0.95 6 16 0.00021 0.051 15.7 0.5 2 23 251 272 250 272 0.97 7 16 0.00087 0.21 13.7 0.4 1 23 277 300 277 300 0.97 8 16 0.0035 0.87 11.8 3.4 2 23 304 325 303 325 0.97 9 16 2e-05 0.0049 18.9 0.7 1 23 331 354 331 354 0.96 10 16 4.1e-06 0.001 21.1 2.2 2 23 362 383 361 383 0.98 11 16 1.4e-06 0.00035 22.5 1.7 1 23 387 409 387 409 0.98 12 16 2.2e-05 0.0055 18.7 1.0 1 23 415 437 415 437 0.98 13 16 0.00082 0.2 13.8 2.0 1 23 443 465 443 465 0.97 14 16 5.9e-05 0.014 17.4 1.8 1 23 471 493 471 493 0.98 15 16 0.00021 0.052 15.7 5.0 1 23 499 523 499 523 0.92 16 16 0.016 3.9 9.7 0.7 1 23 531 554 531 555 0.88
Sequence Information
- Coding Sequence
- ATGATGCGAATCGAAATAAAaccagaattaaaaaataatgaagaagAATCGACTCTTAATGAGGAAAATGagatcaaaattaaaatcgaaaATGATACTCACTTCAAgaatgatataaaaataaagacgGAACCTAGCGAAGCTGCTGTTACTGTTAGCACATCACAAGTGGAAGTAAAATCAGAATTGTTAATGGATGTCGCTTCTGAAGGTATTGAAGACACAGAAGATATAAAATACTTTggggaaaatttaaatatatctgttGAGGAACTAAAAGAGTTCAACAATGATTTAACAGTTATTGAAAATGAAACCACTGTGTACAAATGTCAAATTTGTGGAACAATATTTGTCAAGTACTCAGAATATAAAGTtcacaaaaaaaaccactatATTGAAAAAAGAAGATGCCACATTTGCAAAAAAGTACAGCAAAGCTTGGGAGTTCTTGAAGAACATGTAAACAAACATCTTGGACTCAAACCTTACAAATGTGATGAATGTGATAAGTATTTTGTATCTAAAAATCATCTAAGCTTGCACAAGAGGTGTCACAGCACTGAAGATACTTTTAAATGTACAAAATgtggaaaactttttaaaactcgTGCCTCTTTAAGAAGCCATCGAATTGTACATTCTGAGAAAGTAATTGAGGAATTCAGGTGTAAAGTGTGTGGTCACAGTTCCAATGATGAGGCTCAGCATAAAGCACACATGACTGACCATGCTAAAAAAGCAGAAATCCAATGTGGTTTGTGCAAGAAAGTATTCAATACTGAACGAGGATTAGAAAATCATTTTAGCACTCACAAAGAACTGAAGTTTCCATGTGAATTTTGTGGAAAAATATATCCATCAATGTACCGAATTAAGAGGCATATCAAAAGAGCACATGTACCAAATAAATGTGACCAGTGCAATGAGGTATTTCATGACAGATTTCTTTTCAATAAACATGTAAAACAACAcagtctacaaaaaaaatttgaatgcgAATACTGCCAGAAAGTGTTTGATAAAGCAAAGAACTTGGCAGAACATTTTCGCCTTCAACATAAACAAGATGGAGAAAAAAAGAAGTGTCACATATGCAACAAGgaatttataaacaatgctttgTTAAACAATCATGTCAAGACACATAATAAGTGTTTTAAATGCAAGCTTTGTGACAAAGTTTTTTCTTCTAGatATAATTTGGTGATTCACAGTACGACGCATTCAGGcgcgaaaaattttaaatgcgaCATATGCAACAATTTTTTTGCGAGTAAAACTAGTTTAAAGAATCACGTGGCGACTCATTCAGACGAAAGGAAATTTCAATGCGAAGTTTGCgcgaaaacttttaaaacttccAGACGATTGTACACACACAGTTTGAGTCACGCCACTGAAGAAAAATACCAGTGCGAAATTTGCCTGCAAAAGTTCAAAGTTAAACAATACTTAAAGGCACACATGTACAGGCATTCCAAAGTGAAACCGTTTTCTTGCGACGTGTGTAAAAAACGCTTCaaacacaaaaaaactaaagaaaaacACATGCGCATTGGTAAACACAAACCAATCACCGAAGAGGAGCACGATTGTGACTTTTGCGACGAAACCTTCGTCGAAAGAGATGCATTGCTTGATCATTTTGCGCTAGTTCATCATCAGGAAAATATCGTCAACGAGTGCGAAAATCCTAACAATAAAGAAACTGATGGTATACCTGAAGAAGTTAATGGAAGAGGAGAAATGATTGAAAATAATCAAGTCGATGAAGAATTCAAAACTGTCGTGTGTATTTAA
- Protein Sequence
- MMRIEIKPELKNNEEESTLNEENEIKIKIENDTHFKNDIKIKTEPSEAAVTVSTSQVEVKSELLMDVASEGIEDTEDIKYFGENLNISVEELKEFNNDLTVIENETTVYKCQICGTIFVKYSEYKVHKKNHYIEKRRCHICKKVQQSLGVLEEHVNKHLGLKPYKCDECDKYFVSKNHLSLHKRCHSTEDTFKCTKCGKLFKTRASLRSHRIVHSEKVIEEFRCKVCGHSSNDEAQHKAHMTDHAKKAEIQCGLCKKVFNTERGLENHFSTHKELKFPCEFCGKIYPSMYRIKRHIKRAHVPNKCDQCNEVFHDRFLFNKHVKQHSLQKKFECEYCQKVFDKAKNLAEHFRLQHKQDGEKKKCHICNKEFINNALLNNHVKTHNKCFKCKLCDKVFSSRYNLVIHSTTHSGAKNFKCDICNNFFASKTSLKNHVATHSDERKFQCEVCAKTFKTSRRLYTHSLSHATEEKYQCEICLQKFKVKQYLKAHMYRHSKVKPFSCDVCKKRFKHKKTKEKHMRIGKHKPITEEEHDCDFCDETFVERDALLDHFALVHHQENIVNECENPNNKETDGIPEEVNGRGEMIENNQVDEEFKTVVCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -