Aaln008409.2
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467708.1:99620636-99633096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.038 9.4 8.6 1.0 2 23 230 252 230 252 0.92 2 21 0.0067 1.7 10.9 1.3 1 21 358 378 358 379 0.95 3 21 0.038 9.4 8.6 5.7 1 23 408 431 408 431 0.92 4 21 0.56 1.4e+02 4.9 0.0 6 20 442 456 442 458 0.94 5 21 0.018 4.5 9.6 0.3 1 20 464 483 464 487 0.90 6 21 0.013 3.2 10.0 2.3 2 21 560 579 560 581 0.93 7 21 0.17 41 6.5 0.2 1 12 612 623 612 634 0.78 8 21 0.0024 0.58 12.4 0.4 2 23 638 659 637 659 0.96 9 21 0.016 4 9.7 0.1 3 21 690 708 688 712 0.90 10 21 0.0056 1.4 11.2 0.7 1 23 737 760 737 760 0.96 11 21 0.0016 0.39 12.9 1.9 2 23 774 795 773 795 0.97 12 21 0.0016 0.39 12.9 8.3 1 21 825 845 825 847 0.94 13 21 0.0018 0.43 12.8 0.1 2 23 863 885 863 885 0.92 14 21 0.0004 0.097 14.8 0.5 1 23 899 921 899 921 0.96 15 21 0.0066 1.6 11.0 1.8 3 23 931 952 930 952 0.95 16 21 8.8e-05 0.022 16.9 0.2 1 23 971 993 971 993 0.93 17 21 6.6 1.6e+03 1.5 0.0 1 23 1025 1048 1025 1048 0.92 18 21 0.0002 0.049 15.7 1.4 2 23 1059 1080 1059 1080 0.97 19 21 5.2e-05 0.013 17.6 0.2 1 23 1113 1136 1113 1136 0.96 20 21 3.9e-05 0.0096 18.0 2.6 1 23 1144 1166 1144 1166 0.98 21 21 0.00061 0.15 14.2 0.1 1 23 1181 1204 1181 1204 0.97
Sequence Information
- Coding Sequence
- ATGGCAGAAGGTGAGAATAAAATTCTCGATTTCCAATCGTGTTGTAGGCTGTGTCTCAACGAAATGGTTGACGGAGTCAAGTCGATTTTCGACGAAACCCTTGAAGACAGAAGTCTATCGATAAAGATATCACAACATGTAGCCATAGAGaTTAGTGCATCTGATAAATTATCTAAGAAGGTTTGCCAATTGTGTACGGAAAAGATACTTGATTGGCATTCTTTTAAGGAGCAGTGCCTGCAAAACCAGAAGGTATTGGACGAGTTTCTTTGTTCCAAAATTGATACAGAACCAAACACTGACACTGTAACAGTTGATGAAATCGTCAATAATGTAAATGGCCCAAATTTTTCTGTACCAGATTTTACTCTACAAATAAAGAAAGAGCCAGTCGATAACATAGATCCTTTAATTGATCATGATGAACACTTAGAAGAAACACTGGATCATCCAACCGAAAATGCTGATCAGCAAATTCATCTTCAAAATGATCAACACATTGATCAACCTATTGATCAACCGCTGATTAATCATGTAACCGTTAAGTCTGAGCCATTAGAAATGGATGGAATTGATGAACCTATGGAAGAAGAGTACAACGAGTTTCCTCCGACGTTGTCTCCTCAGCAGCTAGACGAAAATGATCTTGCACAGCCGTTGGTAGTCTGGAACCCCAATAGCAATAGAACATGTAGCGTTTGTGCTAAAGTTTTTAGTAGCGTGGGAAataaaagaaagcatgaaaaattTCAGCATGGTCTCCATAATAACATTTCTGTTGCTACGCCAATTCACACTAACGCTCTTACAAATGGTGCCATTCCTCAAGACCCAGAACTCCAGACTGATCAGCAGAAAATATTATTCGCCATGGGACTGAAGCTGTTGCAGACAAATGCAAGTTTAATTAGCACGGAAGATTTGTCGAAAATCGAGTTAAGTTATATTGAAAAATGTAAGGCGATGGTGAGCATGCACAAAACGTTGACGTGCGCGTGCCATAACGTGCCCCATCAGAATCTTAAAGGACTCTTATCGCATTTAAGAGCCTTGAGAATATGGTTTCCTGTATTTACATGTTATAATTGTATGATTACATTTACGGATAGATCTACATTTACTAGGCACATTTCTAGATGTGCCAGTACTCCTTTGGACTCTATTACGAAATTGAGTAATCTGAAAAGGCGCAGTGAAGTCAAAACAAGATTGTACCAAAATTTCAAATGCACCATCTGCAAATTCATGTTTAGTTTTCACGAAGATTTCTGCAAGCACGTCGACGAAGATCATTCAATGTTGCATTTTCCAGTTCATTGTCCTTGCGGTAGGGTTTTCGAAAATTTGGATGATTATAAGGATCATGTGTATGTTAGCTGTTTAGTAGAATTCTATTGTGACATTTGCTTCATCACCACCAAGACTTTAAGCGATTTTCAGAATCACGCCGTCGGAGTTCACGATGATTCTGAAGGATTCATCCTTCTTCAGGACGACAATTATAAAGTTAGGAAACCTTCGATGCACGTTAGTCCTACCTCTATAGATGAGGGGGCCATCATACAAGGCAAACGCGAACGCAAATCCTCGTTGAGAACTCCGATAATCGACGAGGAATTGGAAGATTCTGTTTCATCATCGGGTCTCTTAAACATGACACCGAAAATGAATAACAGAGTCTGTCCGATTTGTTACAAGGAATATTCTTCCTACAAAAATATGATGCGACATTACAAATGTCATCGGCCCGACGAGGCGCAACTGCAACAATTCGAGTTTTCTCAAGAGCAATCCGAGGTGCAGGATATGGATTTGGAGGACGAGGAATCGTTGTATTCGTGTCCCGATTGCGGCGGCATGTTCAAGACGATGGAGTGGAAAATTCATTTGACGGAACAGCATCAATCGAAACCGTGCGGAGAATGCGGGAAATTCTTCCAGTTCCAGACCGAACTCGATCAACACAGAAGCGTTCATTTAAATCTAAAgGTATACAGAGACTCTAAAACGCAATCATACAAAACCACGATGCTGAGTCCTGGCTCAGACGGGGAAGTAGCCACCGCTTGCGATGTGTGCGACATGCTCTTTACTACCCAAGAAGAACTACTGACGCACAAACTAGAATTGGGACACGGTGATGTCGAAACGATGGAGGAACCTGAAGAGGCTGTCATCGCCGAAACTTCGCCACCGACGCCAAAGAAATACAAGTGTGATTTGTGCGAACAAGAATTCAACAACTACAACGGCCTATGGGAGCACAACAGAAACAAGCATCCCGAAAGAAAAACGCCGCATGAGAACACCTATCCAAAACAATGCAAAGATTGCGATAAAGTTTGCACTACTGGTGCCGCATACTACAGACACCGACAAATCCATGAAAAAATACCTGGCGACGCTTCCTCTGCCGGGAAATCATCCAACAAACTGAAGAAACCTCTGATGCAACTCGATGAAGAATCCTATCATACTTGCAAACGTTGCTTTAAAGTGTTTTCGAATAAGTACAATTTGAAAAATCATCTGAAGTGTCACGGCATAAACGTCAATCCTATGGGAAAGAAATTAATACGGAAAGCGGTTTGTAAAGTGTGTCAACAAGTGTTTGAGTCCAACGAGGAGTTGATCACACACAAGCAAGATGTTCACAACGGTATCGAAACGCCACCGGACGCCGCTTCGTTGGTTTTCGCATGCGATATATGTGTTCTGACGTTCACTAGTAAAATCGCTCTGAAAAAACACAAAGAAAAACACAATGCCAGTACGAAGGCGAaagttttttgcaaatattgcAAAATTCCCTTCGATAATTTCCACAGTTTGTCGCAGCACATGGCAAACGATCATGACCAAAAGACAAAGAACGCATTCAAGATAAAAGAACTGGAAAAACAGGACGAATTCACCTGTTCGATTTGTCAGAAATCCTTCCAAACGGCGGGAGCGCTAACGACACATGTCGGTTGGCACAAACGTGCCCAAAACGAAGGCAACACCAAATTGATGAAACACAATCCGGTACCGCGGGTCATAATCAAAGAGGAACCTCGCGATGATGCCAAATTTCAATGTGTCACGTGCCTGGCCGAGTTGCCGAATGATACAGCATTGCAGGTGCATATTTTGGAAAAACATCGCAGCGTTAGCGCGATCATGTTAATACCGCGTTGCAATACGTGCAACAAAGATTTCGCCACGCAGGACGAGTACGAAACACACAAGAGACTGCACGATTTTCTGGAGCGACAGAAACAACACGAGCAAAAGATGCTGGTACAGCAACAGGACGTTCCACAACAGTCAAGATCTGCAGGAAAAGCGAAGAGTTTTCCATGCAAATATTGCAATGCCGCGTTCAGCAGGTCGGATACGTTGGGTGCGCACGTGCGACAATTGCATAAAGAACACGTCCAGACTGAGTTTAGGTGTCATCAATGCGAGCGGGTATTCGAAAAGCAGAATTCGTTGACGATACATCTAAAAGTACATGAGAAGCAGAGAATAATGCAGGGACCGCCGAGCAAGCCATTGTTTTCTTGTTCGATTTGCAACATGGGATTCGACTTACCGAAGGATTTGAGAGCACATACAATTACGGCTCATCCGTTTTGA
- Protein Sequence
- MAEGENKILDFQSCCRLCLNEMVDGVKSIFDETLEDRSLSIKISQHVAIEISASDKLSKKVCQLCTEKILDWHSFKEQCLQNQKVLDEFLCSKIDTEPNTDTVTVDEIVNNVNGPNFSVPDFTLQIKKEPVDNIDPLIDHDEHLEETLDHPTENADQQIHLQNDQHIDQPIDQPLINHVTVKSEPLEMDGIDEPMEEEYNEFPPTLSPQQLDENDLAQPLVVWNPNSNRTCSVCAKVFSSVGNKRKHEKFQHGLHNNISVATPIHTNALTNGAIPQDPELQTDQQKILFAMGLKLLQTNASLISTEDLSKIELSYIEKCKAMVSMHKTLTCACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCASTPLDSITKLSNLKRRSEVKTRLYQNFKCTICKFMFSFHEDFCKHVDEDHSMLHFPVHCPCGRVFENLDDYKDHVYVSCLVEFYCDICFITTKTLSDFQNHAVGVHDDSEGFILLQDDNYKVRKPSMHVSPTSIDEGAIIQGKRERKSSLRTPIIDEELEDSVSSSGLLNMTPKMNNRVCPICYKEYSSYKNMMRHYKCHRPDEAQLQQFEFSQEQSEVQDMDLEDEESLYSCPDCGGMFKTMEWKIHLTEQHQSKPCGECGKFFQFQTELDQHRSVHLNLKVYRDSKTQSYKTTMLSPGSDGEVATACDVCDMLFTTQEELLTHKLELGHGDVETMEEPEEAVIAETSPPTPKKYKCDLCEQEFNNYNGLWEHNRNKHPERKTPHENTYPKQCKDCDKVCTTGAAYYRHRQIHEKIPGDASSAGKSSNKLKKPLMQLDEESYHTCKRCFKVFSNKYNLKNHLKCHGINVNPMGKKLIRKAVCKVCQQVFESNEELITHKQDVHNGIETPPDAASLVFACDICVLTFTSKIALKKHKEKHNASTKAKVFCKYCKIPFDNFHSLSQHMANDHDQKTKNAFKIKELEKQDEFTCSICQKSFQTAGALTTHVGWHKRAQNEGNTKLMKHNPVPRVIIKEEPRDDAKFQCVTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLVQQQDVPQQSRSAGKAKSFPCKYCNAAFSRSDTLGAHVRQLHKEHVQTEFRCHQCERVFEKQNSLTIHLKVHEKQRIMQGPPSKPLFSCSICNMGFDLPKDLRAHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -