Aaln047925.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467717.1:30716000-30719467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.052 15.7 0.3 2 23 230 252 229 252 0.95 2 13 1.6e-05 0.004 19.2 0.4 1 23 285 308 285 308 0.97 3 13 6.7e-06 0.0016 20.4 0.1 1 23 314 336 314 336 0.97 4 13 3.2e-06 0.0008 21.4 0.7 2 20 342 360 341 362 0.95 5 13 6.9e-05 0.017 17.2 3.3 1 20 373 392 373 395 0.95 6 13 0.00058 0.14 14.3 1.6 1 23 405 427 405 427 0.99 7 13 1.6e-05 0.004 19.2 0.3 1 23 433 455 433 455 0.98 8 13 7.2e-06 0.0018 20.3 1.7 1 23 461 483 461 483 0.99 9 13 2e-06 0.00048 22.1 3.9 1 23 489 511 489 511 0.96 10 13 2.9e-05 0.007 18.4 2.5 1 23 517 540 517 540 0.96 11 13 7.6e-06 0.0019 20.2 0.6 2 23 547 568 546 568 0.96 12 13 7.5e-07 0.00018 23.4 0.2 1 23 574 596 574 596 0.98 13 13 3.7e-05 0.0092 18.0 3.5 2 23 603 625 602 625 0.94
Sequence Information
- Coding Sequence
- ATGGAGAAACCGCCTTCGGTTAGTGGTGGAGTAAAATTCGAAGTAAAATCAGAATCTATAGATGATTTTGTGAAAGCAGTAGAAGTAGAAAATCCTCACACAAATGttatagaaataaaaagaaacgaAGAAAACGGAGAAGTCCATACGGTCGTTCTTCAAAACATTCAAATTCAAGAAAGTGGAAATGATCAATTAGCTATTataggaaaaattatttctcaaAATAATTCTGATGGAAATCTCCAAGTTAACACACAAGAAGAAAGTGTTATACACACATACATTATAAAtaATACAGATTTTGAAGAAGTAGATAGCAGCACAGTTATCTATGAAGAAATCAATGAAGATGACAATTCCATAGAATACATCATAGAAGAAGGAGATTATGAAGATATTGAATCTACTACAGAAGTGGAATATACTCAAGTAGAAATAGCAAATGAGTATGATTTCAATTTGACCAATGAAGAAGTGGACAATACTGACGAACAGGAAGACGGCACCAATGGAACTAAAGTGGTGACTCTTGAGCATGATGAGTATAGCATGGAAGAGGAAATTGAAGAAGAGGAACAAGTGGATGATCCAGATGTAGCAGtggaagaacatgtaaaaaGCCACCAAGAAATAATGCAGGTGAAAGACGAAAGGGCGCCTAGTGACGTTAAAGAAGAGTGGGTGGAATGTGATTTGTGTGAAAAGGTCTTCAAGTCAGTGGCTagatTAAAACGACATATTACAATGAACCATGAAAAACGAGACGAACCAGAAGGAGATGATCCATTAAGTTTACAATTATGTCCATGTTGTGCGGAACCATGGGATTCTGCTCATCTTAGTGGTGATTACAAGTGTGAATTATGTGACAAGCTCTTCATTCAAGCAAACTTTCTGCAACGTCACATGAGTATAGAGCATTCTAAAACCAGTATGTTTATATGTGCAGAGTGCCAAAAGGAATTTGCTAAAAAGGCAGAATTGATTAATCACATGAAAATACATCCAGCAAAGATGCTTAAGTGTCTGGATTGTAACAGAGTATTTACTAGAAAGTACCATCTGGAAAGGCACATTGGACAAACTGGATGCATGGGACAACCTAGGAAAGTGTTTGAATGCAGGGTTTGCAAAAAGTGTTTTACGCGAAAAGATAACTTGTCAGAACATTTATGGAACCATGCTGGTCACGTAAAAAAGAGGAAGAAGTTTAGATGCGAATTTTGTCAAAAAGAATTTCAGGGATTCACTTTGCTGAACATTCATTTACGCACTCACACAGGTGAAAAACCCTACCCATGTGATTTGTGTCCTAAGCGGTTTCCATCTACAGGAGCCATGAAAAAACACAGAAGAAtgcacactggcgaaaaaccgtacCAATGCGAACAATGTTCCAGAACGTTCGCGGCTAAAGAGACACTGAATCGCCACAAACGTACCCACACAGGGGAGAAGCCTCACCAGTGCAAATTCTGCGGCAAATCCTTCATACAACCTTCGCAGCTGCGAGCGCACATCTTCCACCACACAGGCGAGAATGCTTACACTTGCAAATATTGCGGCAGAGCCTTCAACAGAAAATTGAGACTGACGACTCACATTAAGTTCATGCACGAGGGGGCGGATCCGCTGCCCTGTTCCAAATGTGACAAAACTTTCTTCAGAAAGGAGGACGTAGCCAGGCACATGTTGTCACATAGCGGAGAGAGACCCTTCGTGTGCGATATATGCAAAAAAGGCTTTGCCGTGAAATCCTCTCTCAAGATTCACATGAACATCCACCAAACGGAGTCGCCTTGCAGCTGCGAGACCTGCGGTAGAGCCTTCATCCGCCGCGATTGCCTCATGAGACACATTCGGGCTCGTCACAGAGACGTACTCGAAGACATTTTGGCCAATGCCGAAAAGAAGCGTCTCCAACAACAATTGCTGACCGCTATAAGCGAATCGTCTGCCGAAAATTTATCGGAGAACCTCGTTTGGAACGAACTCACGCTCACCGAATCGATAAAAGAATTGTTGACTTTACTTGTGGATAACGAGTGTTTGTTGGAGTTCGGTTATCCCGACGCTCCCGTCGACAGAGTCCTGGATTGCGTCATCAAACGATGTGGACACCAACCCGCCTCTGAGGAGGACTTCGATTACATAGGTAAAATCAGAGAAAACGCGAAGCTTCTGTTCACTGCTGTTATAGATGATGAGGCTGTGAAAGAGCTATTAAACAATCAGACAGTAGAAGAAGTCATCTTGCACGTTTTGAGATTGGCGAAGAAGCAAAAAGAGAATAGTTAG
- Protein Sequence
- MEKPPSVSGGVKFEVKSESIDDFVKAVEVENPHTNVIEIKRNEENGEVHTVVLQNIQIQESGNDQLAIIGKIISQNNSDGNLQVNTQEESVIHTYIINNTDFEEVDSSTVIYEEINEDDNSIEYIIEEGDYEDIESTTEVEYTQVEIANEYDFNLTNEEVDNTDEQEDGTNGTKVVTLEHDEYSMEEEIEEEEQVDDPDVAVEEHVKSHQEIMQVKDERAPSDVKEEWVECDLCEKVFKSVARLKRHITMNHEKRDEPEGDDPLSLQLCPCCAEPWDSAHLSGDYKCELCDKLFIQANFLQRHMSIEHSKTSMFICAECQKEFAKKAELINHMKIHPAKMLKCLDCNRVFTRKYHLERHIGQTGCMGQPRKVFECRVCKKCFTRKDNLSEHLWNHAGHVKKRKKFRCEFCQKEFQGFTLLNIHLRTHTGEKPYPCDLCPKRFPSTGAMKKHRRMHTGEKPYQCEQCSRTFAAKETLNRHKRTHTGEKPHQCKFCGKSFIQPSQLRAHIFHHTGENAYTCKYCGRAFNRKLRLTTHIKFMHEGADPLPCSKCDKTFFRKEDVARHMLSHSGERPFVCDICKKGFAVKSSLKIHMNIHQTESPCSCETCGRAFIRRDCLMRHIRARHRDVLEDILANAEKKRLQQQLLTAISESSAENLSENLVWNELTLTESIKELLTLLVDNECLLEFGYPDAPVDRVLDCVIKRCGHQPASEEDFDYIGKIRENAKLLFTAVIDDEAVKELLNNQTVEEVILHVLRLAKKQKENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00026268;
- 90% Identity
- iTF_00026268;
- 80% Identity
- -