Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467710.1:49995395-50006303[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.8e-06 0.00094 21.1 0.2 1 23 182 204 182 204 0.98

2 12 2.6e-06 0.00063 21.7 0.8 1 23 210 232 210 232 0.98

3 12 6e-06 0.0015 20.5 3.2 1 23 238 260 238 260 0.98

4 12 0.00041 0.1 14.8 2.2 3 23 274 294 272 294 0.95

5 12 2e-05 0.005 18.9 0.1 3 23 302 322 300 322 0.97

6 12 2e-06 0.00049 22.0 0.9 1 23 328 350 328 350 0.98

7 12 5.9e-07 0.00014 23.7 0.5 1 23 356 378 356 378 0.99

8 12 4.9e-06 0.0012 20.8 0.2 1 23 384 406 384 406 0.98

9 12 4.1e-06 0.001 21.0 5.5 1 23 412 434 412 434 0.99

10 12 1.7e-06 0.00041 22.3 0.9 1 23 440 462 440 462 0.98

11 12 2.6e-07 6.3e-05 24.8 1.6 1 23 468 490 468 490 0.96

12 12 5e-08 1.2e-05 27.1 1.8 1 23 496 518 496 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.8e-06	0.00094	21.1	0.2	1	23	182	204	182	204	0.98
2	12	2.6e-06	0.00063	21.7	0.8	1	23	210	232	210	232	0.98
3	12	6e-06	0.0015	20.5	3.2	1	23	238	260	238	260	0.98
4	12	0.00041	0.1	14.8	2.2	3	23	274	294	272	294	0.95
5	12	2e-05	0.005	18.9	0.1	3	23	302	322	300	322	0.97
6	12	2e-06	0.00049	22.0	0.9	1	23	328	350	328	350	0.98
7	12	5.9e-07	0.00014	23.7	0.5	1	23	356	378	356	378	0.99
8	12	4.9e-06	0.0012	20.8	0.2	1	23	384	406	384	406	0.98
9	12	4.1e-06	0.001	21.0	5.5	1	23	412	434	412	434	0.99
10	12	1.7e-06	0.00041	22.3	0.9	1	23	440	462	440	462	0.98
11	12	2.6e-07	6.3e-05	24.8	1.6	1	23	468	490	468	490	0.96
12	12	5e-08	1.2e-05	27.1	1.8	1	23	496	518	496	518	0.98

Sequence Information

Coding Sequence: atggatatgagaatatatttatctGCTCCACTACAGATTGATAAAATCTGTAGGGCATGTTTGTCAGAAAAAGGTGATATGAGGCCCTTATTTGGAGCCTGTTTGGATGAAATGCTtaactcttttgcttctctcCAGGTAGCTGATAATGATGGATTCCCTAGTCTTATGTGTGTTCAATGTGTACTACAGTGCAGTAGAGCTTACACTTTTAAACAACAATGTGAAAAATCTGATAATATTCTACGTCAATATCTCTCTCCAGAATTTCAGcaaCAATTAACAGAAACAATTGCTGAAAAACAACGAGAACAAGCTAAACAAGAATTACAAGAACAGCTACAATTTTCAGAACATATCGGAACTGTTCTTATTAAACAAGATATTCCAGAATATGTTACTTATGCAGAAGAGGATCAACTGGAAGTAAAGGAAGGATTGTACACAATTGAGGCTGCTACAGAAGCAGAGACTGAAGAACTTGGTGATAGTATTGTATTACAGCTTGAAGCCAATCAGTCATCGGatgtaaataaactaaaatattccTGTCCAAAATGTGAACAATCTTTTGCTTTAAAAGTGGATCTAAAGGTTCATATGATGTCTCATCCTAAAGATCTTGATTATGAATGCCATGTATGTGATAAAGCTTTCAGCGAAGCAAGAGTTTTGAAACGCCATCTTAAAATTCATTTGGAACAAAAGCCTCACCAATGCGATCAATGTGATATGTCGTTTGCAGAAAGTTCTAATTTgaccaaacataaaaaaaaacacactggtgagttaagaaatattaaaggaaagccACATTTGTGCTCGTTTTGTGGTCGAGCTTTTAAATGGGCATCTAGTTTGTCCAAACATATGAAATATCATACTGGACATAAGTTGTTGGCTTGTGATTATTGTGGAAAACAGTACGTAGAGgcTAGAAGTTTAAGAATTCATATTAGATCTCATACTGGAGAACGTCCATATGTGTGTGATGTTTGTGAAAAAGGCTTTACTCAAGTTTGTAATTTGGAAAAACATCTTAGAGTACATACTGGGGAGAAACCTTTCCAATGTCCAGTTTGCAATAAAAGGTTTACACAATCTGGCTATGTGGGAATCCATATGCGTACACACACCGGAGTTCGTCCATACGTCTGCGGAACTTGCGGTAAAGCTTTCGCCGGTTCTAGTACACTTAATATCCACCAACACGTCCATACTGGAGAAAAACCTTACACCTGCAACGTGTGTAATAAATGCTTTAGCCGTCACGAAACTCTTATTATTCACACCAGGTCGCATACCGGAGAGAAACCTCACGTTTGCAGCGTTTGTAACAAGGGGTTCACGAGCAGCGGATTGTTGTCAGGACATATGAGAACTCATACAGGTGAAAAGCCTCACGCTTGTGATAGCTGCGGTAAAAAatttgctAGTTCTAGTAGCTTGAAGGTTCATATGAGGTCCCATACGGGAGACAAACCTTTTACGTGTAAAATTTGCAATAAGAGTTATTCTCAGTCTAGTTCTCTTCAGCAACATATGGTTACTCATTCTCTAAAAACAGAACTAAAAGTAGAAACAGTTCGCGTTACTTTACCAGAATTAATaacTGTTGGCGATAACCAAACTATCCAGGTACAATCAATATCTTCCATTTAG
Protein Sequence: MDMRIYLSAPLQIDKICRACLSEKGDMRPLFGACLDEMLNSFASLQVADNDGFPSLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPEFQQQLTETIAEKQREQAKQELQEQLQFSEHIGTVLIKQDIPEYVTYAEEDQLEVKEGLYTIEAATEAETEELGDSIVLQLEANQSSDVNKLKYSCPKCEQSFALKVDLKVHMMSHPKDLDYECHVCDKAFSEARVLKRHLKIHLEQKPHQCDQCDMSFAESSNLTKHKKKHTGELRNIKGKPHLCSFCGRAFKWASSLSKHMKYHTGHKLLACDYCGKQYVEARSLRIHIRSHTGERPYVCDVCEKGFTQVCNLEKHLRVHTGEKPFQCPVCNKRFTQSGYVGIHMRTHTGVRPYVCGTCGKAFAGSSTLNIHQHVHTGEKPYTCNVCNKCFSRHETLIIHTRSHTGEKPHVCSVCNKGFTSSGLLSGHMRTHTGEKPHACDSCGKKFASSSSLKVHMRSHTGDKPFTCKICNKSYSQSSSLQQHMVTHSLKTELKVETVRVTLPELITVGDNQTIQVQSISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: -
80% Identity: -