Aaln001559.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467708.1:12534277-12538342[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3e-05 0.0074 18.3 2.2 1 23 143 165 143 165 0.97 2 20 4e-06 0.00099 21.1 1.0 1 23 171 193 171 193 0.98 3 20 2.9e-06 0.00072 21.5 4.2 1 23 198 220 198 220 0.99 4 20 0.0029 0.7 12.1 3.7 2 23 227 249 227 249 0.93 5 20 0.00022 0.054 15.6 0.4 2 23 255 276 254 276 0.97 6 20 6.5e-05 0.016 17.3 1.6 3 23 288 308 286 308 0.97 7 20 2.1e-06 0.00051 22.0 1.6 1 23 314 336 314 336 0.98 8 20 1.2e-05 0.0029 19.6 0.6 1 23 342 364 342 364 0.98 9 20 2.4e-07 6e-05 24.9 1.7 1 23 370 392 370 392 0.97 10 20 8.7e-05 0.021 16.9 3.2 5 23 401 419 398 419 0.95 11 20 6.7e-06 0.0016 20.4 5.5 1 23 449 471 449 471 0.99 12 20 1.3e-05 0.0032 19.5 5.8 1 23 477 499 477 499 0.98 13 20 8.3e-06 0.002 20.1 1.3 1 23 506 528 506 528 0.98 14 20 7.1e-05 0.018 17.1 1.5 3 23 536 557 534 557 0.96 15 20 3.6e-05 0.0088 18.1 1.5 1 23 563 585 563 585 0.97 16 20 9.7e-05 0.024 16.7 0.3 2 23 596 618 595 618 0.95 17 20 0.00022 0.054 15.6 0.5 1 23 626 649 626 649 0.94 18 20 8.3e-05 0.02 16.9 5.2 1 23 655 677 655 677 0.98 19 20 0.00012 0.029 16.4 4.2 1 23 683 705 683 705 0.98 20 20 2.6e-05 0.0065 18.5 1.6 3 23 713 734 712 734 0.97
Sequence Information
- Coding Sequence
- ATgggaaactgCTTTTATGACGATCAGCTATATTCTTCCTTTTCGATGGACTCAATCTCGACGACGATACAACTTCCCAGTTTCATGGACCTGGTGAACTCTCAGAAGCAGCACGCTTTGACCGAAAGCATAATGGAGACTTCGGTGGTCGATCAATTGAACGATTCCGACGAATTAATGAATTTACTTTCCACCGAAGAAAATTGCACAgcaattttacaaaacatttccACCAACGAACAATTCCAGAGATTAATGAACGAAGAATCGGAATTCGTACCCACCGAAGAAGTGGAACAATTAATCAACAAAATCCAACCGCATCCTGTTCTTGATTCAGAAGTGATAAATGCCAAAACGACGGACGACTTTGCGGGCTCGCACGACGTTATCGAAAAGTGTCCCAAGGTAAAAACGAAAGAGATCCATCAGTGCGAGCAGTGCGGCAAAATCCTATCGACGAAAAAATTGCTCAAAAAACACACGCTGATCCATACTAAAGAGCGCAATTTTCCGTGCGAAGTGTGCGGGAAGCTGTTCAGGCACAATTACGAAGTGACGGCCCACATGAAATCCCACAACAAACCCACCTATCAATGCGAGATATGTCCACAAATGTTCATACATAAATCTCACTTGAACATCCATCGGAAGAAACATTTTGGCGAGAACACTGCCAGCTGCAAAGACTGCACCATGAAATTCAGAACCGCCAAAGAGCTTAAAGAACACAGGAGTCACTACCACGACGATTATTCCGTCGTGTGCGACATTTGTGGCAAGTGTCTGAACAGAGGATCGGCCTTGAACGAGCACAAACTGACTCACGACCCCAATTACGGTAAAGAAAGGCCGTTCGGCTGTCAGATATGCGGCTACAAGTTTTTGACGTCGAAAAATTTGAAGAAGCACATGAAGCTGCATCTGAACATCAAGTCGTACGTGTGCAGCATTTGCGGCAAATCGGTGAGCAGCAAATCGTGCTTGCTGACGCACCTGAAGATGCACACCGGCGTCAAGGATTTCAACTGCGacgtttgcaataaaaattttgcatCCAAAGATTACCTGGCGCTTCACAAGAGGATACACACCGGCGACAAGCCGTTCGAATGTAAAATTTGTGGCAAAAGGTTCACGCAAAAGAACTCCTTGACTGTCCACGTTAGATTTCACACCGGCCACAAACCCTACAAGTGCGAATGCGGGAAACAATTCGCCACGAAAAGCCACCTTATGACGCATTATAAGACACACGACATCGGTGGCGTTGATATAGAGTTAATGTATTTGGTGGGAGACCTTAGCGAGTTTTTGATGAAGTTAGAATCCGGCAAAAAAGTGTTTCAATGTCGAGAATGCCCCAAATCGTTCACGACGAAACATTACTTTAAGAGCCACCTGCTGACGCACATCGGCATATTTCCGTTCCAATGCCCCCACTGCCGAAAGAAATTCAAGAGAAAGCAAGATTTAAAGAGTCACAGTTTGACGCACAACTCCAGCAGAAACACGTTCACGTgcgaaatttgtaaaaaaatcctCACCACCAAATCGTCTTTGCTGATCCACCAGAAGAGACACCTGAAGCTCTACAACATATTCTGCAATTACTGTCAAAAGGGGTTTTACTCGAAGACGACGTTAACGTTGCACATTAATTCGAAACACGAAGGAAAGACGACGTTCGTATGCGACGTGTGCGGCAGGTCTTGCTACGACAAAACCAGCTTGGAAAACCACCGAGCCAGACACGACGAAAGCTACGGCAAAGAGAAGAACATCGAATGCCAACTGTGCGGTACCAAGTTCATAGATCAAAAGTACCTCTCGGTGCATATGTACAAGTTGCACAGCACTGACCACAATCACAGATTCGTGTGCGAAAGCTGCGGCAAAAAACTGTGCTCCAAAGTTAGTTTGCAGGAGCATATGATAGCCGTGCACCAAGGTCTGAAGCCGCACAAGTGCGAAATTTGCCACCAGTCTTTCGCGAATCGCACCACCCTCAAACTCCACGAGAGACGACACACGGGCGAGCGCCCCTACAGGTGCACCTTTTGTCTGAGGGCTTTCACGCAAAGTCACAGCCTTAAAATGCATTTGAGActacacaccggcgaaaaaccagaGATATGCAGCATCTGTCAGAATGGCTTCACTTCCAAAAGTATGCTCAAGTCGCACATGAAAACCAAGCACAAGTTGTTCGAAGATGTACATTCTAaagaagtattttaa
- Protein Sequence
- MGNCFYDDQLYSSFSMDSISTTIQLPSFMDLVNSQKQHALTESIMETSVVDQLNDSDELMNLLSTEENCTAILQNISTNEQFQRLMNEESEFVPTEEVEQLINKIQPHPVLDSEVINAKTTDDFAGSHDVIEKCPKVKTKEIHQCEQCGKILSTKKLLKKHTLIHTKERNFPCEVCGKLFRHNYEVTAHMKSHNKPTYQCEICPQMFIHKSHLNIHRKKHFGENTASCKDCTMKFRTAKELKEHRSHYHDDYSVVCDICGKCLNRGSALNEHKLTHDPNYGKERPFGCQICGYKFLTSKNLKKHMKLHLNIKSYVCSICGKSVSSKSCLLTHLKMHTGVKDFNCDVCNKNFASKDYLALHKRIHTGDKPFECKICGKRFTQKNSLTVHVRFHTGHKPYKCECGKQFATKSHLMTHYKTHDIGGVDIELMYLVGDLSEFLMKLESGKKVFQCRECPKSFTTKHYFKSHLLTHIGIFPFQCPHCRKKFKRKQDLKSHSLTHNSSRNTFTCEICKKILTTKSSLLIHQKRHLKLYNIFCNYCQKGFYSKTTLTLHINSKHEGKTTFVCDVCGRSCYDKTSLENHRARHDESYGKEKNIECQLCGTKFIDQKYLSVHMYKLHSTDHNHRFVCESCGKKLCSKVSLQEHMIAVHQGLKPHKCEICHQSFANRTTLKLHERRHTGERPYRCTFCLRAFTQSHSLKMHLRLHTGEKPEICSICQNGFTSKSMLKSHMKTKHKLFEDVHSKEVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -