Basic Information

Insect: Agelastica alni
Gene Symbol: -
Assembly: GCA_950111635.2
Location: OX467712.1:8659936-8666197[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0028 0.69 12.1 0.1 2 23 12 33 11 33 0.96

2 25 2.5e-05 0.0062 18.6 0.7 1 23 39 61 39 61 0.99

3 25 0.064 16 7.9 2.4 2 23 155 176 154 176 0.97

4 25 0.004 0.98 11.7 0.1 1 21 182 202 182 203 0.94

5 25 0.0094 2.3 10.5 2.0 2 22 264 284 263 284 0.95

6 25 5.5e-08 1.3e-05 27.0 0.3 1 23 291 313 291 313 0.99

7 25 3.1e-06 0.00077 21.4 0.6 1 23 319 341 319 341 0.99

8 25 0.045 11 8.3 0.7 1 23 347 369 347 369 0.95

9 25 1.4e-05 0.0034 19.4 1.9 1 23 375 397 375 397 0.99

10 25 5.2e-07 0.00013 23.9 1.0 1 23 403 425 403 425 0.98

11 25 2.2e-05 0.0054 18.8 0.1 1 23 431 453 431 453 0.97

12 25 5.2e-05 0.013 17.6 3.3 1 23 459 481 459 481 0.99

13 25 0.00019 0.046 15.8 0.2 1 20 487 506 487 508 0.96

14 25 0.13 31 6.9 1.3 3 23 557 577 555 577 0.95

15 25 0.017 4.1 9.7 0.1 2 22 584 604 583 604 0.90

16 25 7.4e-05 0.018 17.1 6.7 2 23 634 655 633 655 0.98

17 25 1.7e-05 0.0041 19.1 2.3 1 23 661 683 661 683 0.96

18 25 7.3e-07 0.00018 23.4 0.6 1 23 689 711 689 711 0.99

19 25 0.019 4.7 9.5 0.7 1 23 717 739 717 739 0.91

20 25 1e-07 2.5e-05 26.1 3.0 1 23 745 767 745 767 0.99

21 25 2.6e-06 0.00065 21.7 2.2 1 23 773 795 773 795 0.98

22 25 0.011 2.7 10.2 0.5 2 23 801 824 800 824 0.91

23 25 0.00011 0.028 16.5 1.1 1 23 832 854 832 854 0.95

24 25 0.00016 0.039 16.1 1.7 1 23 860 883 860 883 0.97

25 25 6.5e-05 0.016 17.3 2.9 1 23 888 911 888 911 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0028	0.69	12.1	0.1	2	23	12	33	11	33	0.96
2	25	2.5e-05	0.0062	18.6	0.7	1	23	39	61	39	61	0.99
3	25	0.064	16	7.9	2.4	2	23	155	176	154	176	0.97
4	25	0.004	0.98	11.7	0.1	1	21	182	202	182	203	0.94
5	25	0.0094	2.3	10.5	2.0	2	22	264	284	263	284	0.95
6	25	5.5e-08	1.3e-05	27.0	0.3	1	23	291	313	291	313	0.99
7	25	3.1e-06	0.00077	21.4	0.6	1	23	319	341	319	341	0.99
8	25	0.045	11	8.3	0.7	1	23	347	369	347	369	0.95
9	25	1.4e-05	0.0034	19.4	1.9	1	23	375	397	375	397	0.99
10	25	5.2e-07	0.00013	23.9	1.0	1	23	403	425	403	425	0.98
11	25	2.2e-05	0.0054	18.8	0.1	1	23	431	453	431	453	0.97
12	25	5.2e-05	0.013	17.6	3.3	1	23	459	481	459	481	0.99
13	25	0.00019	0.046	15.8	0.2	1	20	487	506	487	508	0.96
14	25	0.13	31	6.9	1.3	3	23	557	577	555	577	0.95
15	25	0.017	4.1	9.7	0.1	2	22	584	604	583	604	0.90
16	25	7.4e-05	0.018	17.1	6.7	2	23	634	655	633	655	0.98
17	25	1.7e-05	0.0041	19.1	2.3	1	23	661	683	661	683	0.96
18	25	7.3e-07	0.00018	23.4	0.6	1	23	689	711	689	711	0.99
19	25	0.019	4.7	9.5	0.7	1	23	717	739	717	739	0.91
20	25	1e-07	2.5e-05	26.1	3.0	1	23	745	767	745	767	0.99
21	25	2.6e-06	0.00065	21.7	2.2	1	23	773	795	773	795	0.98
22	25	0.011	2.7	10.2	0.5	2	23	801	824	800	824	0.91
23	25	0.00011	0.028	16.5	1.1	1	23	832	854	832	854	0.95
24	25	0.00016	0.039	16.1	1.7	1	23	860	883	860	883	0.97
25	25	6.5e-05	0.016	17.3	2.9	1	23	888	911	888	911	0.98

Sequence Information

Coding Sequence: ATGGAAGAATCAGAAATATTGGATGATAATTGGGAATGTGTGgtttgttttgacagttttgattcaaaaattgatttaacTGCACATCTTAGAACTCATGTTGGTCTTAAATCATTTAGGTGTATGATCTGTTCAAAATTATTTGTACAAAATAGTTTACTAGAAGATCATTTAAAGACACATAAGGAAATTATTAAGAATGATGTAATTAAGAAGGAACCAAAAGAGGAAGCTACTGAAGTGGTTATAGATTTTAATAATGACTACAATGAATTTAAGcCTGTTGTTACCAAGGACTACCTAAATAATGAACATTTTGCTGAAGATGGAGAAGATGAGGATGAAGAGGAAGATGAGGAGGaagaggaggaggaggaggaggaagAACATATTAGATTTGAAATTATTGAAGATGATGAAGATCCTTTTGGGGAAGCTAGCGATATTGATGATTATTCTTCCCAGTGTGTAGTATGTTGTAAGACATTCTCATCAGTAAATGAGCTAAGTTTGCATCTTAAAAAACATATTGGTTTAAAACCTTTTGATTGTACAAATTGTTTGGAATCTTTTCCAACTAAACCTGATTTAGTTAAACATGTTAAGATTTGTGAAGATAGTTTTGTTAAAAAGGAATATGTTGTTGTTAAAGATGAGTTTCTAGGATTTAAAGAAGAAGACAAATTTGATATagagaaagaaaaagagaaaCTTGCTGAGGTTATTAGACAACAAGAAGCtacaaaagGTCTTAGAAAGAAAAAACATATGAAAATGAAAACAAGGATTAAGTGTCCTAATTGCCCTCTAACTTTTGACAATGTTTGTCACTTTAGAATCCACTATCGTAAATATACTGGAGAAAAGCCTTACAAGTGCCCTGTATGTCAAAGAGCATTTGCTAAAAATAGCAATCTTACTTCTCACATCAGAATACATACTGGCGAAAGGAGATTCCAGTGCCCTTATTGCCCCAAGAAAGCAGACCACAGAAGTGCACTTAAGGTCCACATAAGAGTACATACTGGAGAAAAACCATATAAGTGTCCTATATGTTTGGAAGATTTTGTGCACAAAAGGTCTAGAGATACCCATGTAATGGCTCACAACAATGAACGCCCTTTCGAGTGTACAGTGtgcaacaaaacttttttaaagaagTACAACCTCGAGTTGCATTTAAGAACCCACTTTGGAATAAAACCATACGAGTGCACTCTTTGTTGGAAGTCCTTTACTACTAGAAGTTCGTTAAATCTACATATGGATTCTCACGCTACAACAAAACCTTTCGCTTGCGACGTGTGCGGGAAGGCTTTTCCGAGCAAAATTCGTTTGAAAGACCACCTTAAAGTTCATTCAGGCGTGAGGCCCTACCAGTGTGAATTCTGCGCTAAAACTTATTACAATAAAGGTCACTTGAGGGAGCACCAAAAGATCCACACTGGATTTAAACCGTACCACTGTGAAGTTTGTTCCAGGGAATTTGCCAGGAAGCAGGATTTAAATATTCATATGGACGAAGATTCAAAACCAATAgatgtattaaataaacaagAAGAAACAGTTTTGTTGGAAAAAATTGACAAgctaattaatgaaaaaatacgTTACCCTGAGTTATCTTGTAAAATACAAGATGATGTTGATGACAAAGATTTGTCTCATTGTGCTTTATGTCTTATGGAATTTTCTTCGTCAATTGAAATGAGAAAACATCTTCAACAACATATTTCCTTAAAACCCTTTGATTGCATTATTTGTTTAATGTCATTTTCTAATGAAGTAAATTTAGTAAAACACATTAAAACTTGCAAGGGAATTCAAAAAGAAAACATAGAcgaaattaaattgaaaaataataagaaaggGAGTAAGAATAGAATCAAGACTCTTGTGAAGTGCCCCAACTGTTCAATGACCTTTAATAATAGATGCCATTTAAGAACTCATATGAGAAAACACACTGGAGAGAAACCTCACATTTGCTCAATTTGCCAAAGAGGATTTGCTAGCAAAACTAATCTCTCAAAACATTTAAGGTATCATGTGGGAATAGAAAAATACACCTGTCCATATTGCTCGAAAGGTTTTATTCAAAACACTGCCCTCACCATCCATTTGCGAAAACACACTGGAGACAAACCCTATCAGTGCCCAAtctgtttgaaaaaatttcccTACAAAAGATCCAGAGATTATCATGTAATGGCACATAAcaatgaatataattttaaatgtgacaAGTGCGATAAAACGTTCATAAGAAAAGATAATTTTAAGAGTCACTTAAGAATCCACTATAATGTACGACCTTTCAACTGCAATGAATGTTTAAAATCTTTTACTACAAAAACTTCCTTAAAAATACATCTTAATACGCATTCCAAGCAAGAGTCAGTATGCGAAATATGCTCAGCTATATTTGATTCCAAAATCAAACTAAGGCAACACAGAAAAAAATCAGATCATCAAAAAATTGAAGAAAAGTTGTATCATTGTGACCAATGCCCTAAAGCATTTTCGAGAGAGGCTAGTTTAAAAATGCACAATACGGTTCACAGCAGTTGTAGGCCATTTTCCTGTTCATTTTGTTTGCTCTACTTTTCAAGAAAGAGCGAGCTGATCAGACACACAAATACTATACATATTGGATTAAAGTTCACTTGTGAATTGTGCAATAAAAATTTCACTAGAAAAAATAGATTAAATTATCACGTGAGGAAAGAACATCCACAATAA
Protein Sequence: MEESEILDDNWECVVCFDSFDSKIDLTAHLRTHVGLKSFRCMICSKLFVQNSLLEDHLKTHKEIIKNDVIKKEPKEEATEVVIDFNNDYNEFKPVVTKDYLNNEHFAEDGEDEDEEEDEEEEEEEEEEEHIRFEIIEDDEDPFGEASDIDDYSSQCVVCCKTFSSVNELSLHLKKHIGLKPFDCTNCLESFPTKPDLVKHVKICEDSFVKKEYVVVKDEFLGFKEEDKFDIEKEKEKLAEVIRQQEATKGLRKKKHMKMKTRIKCPNCPLTFDNVCHFRIHYRKYTGEKPYKCPVCQRAFAKNSNLTSHIRIHTGERRFQCPYCPKKADHRSALKVHIRVHTGEKPYKCPICLEDFVHKRSRDTHVMAHNNERPFECTVCNKTFLKKYNLELHLRTHFGIKPYECTLCWKSFTTRSSLNLHMDSHATTKPFACDVCGKAFPSKIRLKDHLKVHSGVRPYQCEFCAKTYYNKGHLREHQKIHTGFKPYHCEVCSREFARKQDLNIHMDEDSKPIDVLNKQEETVLLEKIDKLINEKIRYPELSCKIQDDVDDKDLSHCALCLMEFSSSIEMRKHLQQHISLKPFDCIICLMSFSNEVNLVKHIKTCKGIQKENIDEIKLKNNKKGSKNRIKTLVKCPNCSMTFNNRCHLRTHMRKHTGEKPHICSICQRGFASKTNLSKHLRYHVGIEKYTCPYCSKGFIQNTALTIHLRKHTGDKPYQCPICLKKFPYKRSRDYHVMAHNNEYNFKCDKCDKTFIRKDNFKSHLRIHYNVRPFNCNECLKSFTTKTSLKIHLNTHSKQESVCEICSAIFDSKIKLRQHRKKSDHQKIEEKLYHCDQCPKAFSREASLKMHNTVHSSCRPFSCSFCLLYFSRKSELIRHTNTIHIGLKFTCELCNKNFTRKNRLNYHVRKEHPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -