Basic Information

Insect: Agelastica alni
Gene Symbol: SCRT1
Assembly: GCA_950111635.2
Location: OX467711.1:6369959-6376672[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00012 0.25 13.1 0.4 12 38 294 317 288 322 0.87

2 5 0.37 7.9e+02 1.9 0.4 18 28 331 341 320 356 0.75

3 5 0.01 22 6.8 0.2 19 28 358 367 349 379 0.84

4 5 0.00042 0.89 11.3 0.4 19 41 386 405 374 408 0.88

5 5 0.03 63 5.4 2.7 14 43 409 435 406 436 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00012	0.25	13.1	0.4	12	38	294	317	288	322	0.87
2	5	0.37	7.9e+02	1.9	0.4	18	28	331	341	320	356	0.75
3	5	0.01	22	6.8	0.2	19	28	358	367	349	379	0.84
4	5	0.00042	0.89	11.3	0.4	19	41	386	405	374	408	0.88
5	5	0.03	63	5.4	2.7	14	43	409	435	406	436	0.85

Sequence Information

Coding Sequence: ATGATCGTAGATCGCCCAGACGTCACAAGGATTGCTGACTTCAAAGTTGTCAACCGCTTCGAGTATCTAGGATCTATTGTGATTAACACCGGCGAATGTACATCTCCTCAGTTCGTTCCCAACGGCACTAATTTGGACAACAGAACAAAGCATACACCAAATGAAGCAACAACGTGTCTGTCGAAACGTAGCGCCGAAGAAACAGAAGCCGCGCACGACCTTCTCTCTTTATCGCAAAGTCTGCCGCCGTTACCGGCGCCCAGCGTCGTCATGATCCACCACACGATATCCTCCGAGGCGGACCCCCCGAGCCCCGTTCACTGTTACCGACCGCTTTCGCCGGAACTGGCTGGCAGGCACGAAGCAGAAAGAAGACAAGTATCTGTGATCCAACACGCTGCGGTACCGCCACCCGCGCAAACCGCGATCCTACCCCAAGTGGTACTACCCTGCTACACCACGTCGCCCATAGTGTACGTGGTACAAGTACCGGCTGCCGTGCCGACGCCTCCGACGTCGGAATGCTCTTCCGACGTGGAGAACGTGCAATTGTGCACCGCGGAACGGTTGCACCGAGACGTCGCCGTGATACCACCGCACGCAGACGACATCCTAATACTTCCTTTATCTCCCGAGCCGGACAACGTCGAACAGCAAAGGCTGCGATCCACAACGGCGTCTTCTACCGCTAATTTAACGATTCCAGACCGCCGAAAAAGGAAGAACAAGAGGACCAACAAAAGCAGCAGAAGCTCTGCGAACGAGAATCGTTCGGATTCGCCGAGGAACGACATTACTGCAACGCTTAAAACGAAATTCTACAAAGTCGTGGAGGAGGACGAAGACCAAGAGATCGACGTCGAAACCACCTCGGACGATGCCCAGAAGAACCGCTACGTGTGCGGCGAGTGCGGCAAGCAGTACGCCACGTCCAGCAATCTGTCCAGACACAAACAGACGCACCGCAGTCTGGATTCGCAGTCGGCGAAGAAATGCGTCACATGTGGCAAAGCTTACGTGAGCATGCCCGCGCTGGCGATGCACCTGCTCACACACAAGTTGGCACACGGTTGCGGCATTTGTGGCAAGCAGTTCTCCAGACCTTGGTTGCTGCAAGGTCACCTGCGCTCGCACACGGGAGAAAAGCCGTACGGTTGCGCGCACTGCGGCAAAGCCTTCGCCGACAGGTCGAACCTGCGGGCGCACATGCAGACGCACTCGAACGATAAGAATTTCAGCTGCAACAAGTGTCAGAAGACGTTCGCTTTGAAGTCCTATCTCAATAAGCATTTGGAGTCGTCGTGCACGCTGTGGGATTCGAAAACGCAGAGGTATAAAAAGACCGTGCATGCTGAGACCCAAACGCTAGCGTTAGCGGTCGACTAA
Protein Sequence: MIVDRPDVTRIADFKVVNRFEYLGSIVINTGECTSPQFVPNGTNLDNRTKHTPNEATTCLSKRSAEETEAAHDLLSLSQSLPPLPAPSVVMIHHTISSEADPPSPVHCYRPLSPELAGRHEAERRQVSVIQHAAVPPPAQTAILPQVVLPCYTTSPIVYVVQVPAAVPTPPTSECSSDVENVQLCTAERLHRDVAVIPPHADDILILPLSPEPDNVEQQRLRSTTASSTANLTIPDRRKRKNKRTNKSSRSSANENRSDSPRNDITATLKTKFYKVVEEDEDQEIDVETTSDDAQKNRYVCGECGKQYATSSNLSRHKQTHRSLDSQSAKKCVTCGKAYVSMPALAMHLLTHKLAHGCGICGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSNDKNFSCNKCQKTFALKSYLNKHLESSCTLWDSKTQRYKKTVHAETQTLALAVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026349;
90% Identity: iTF_00026349;
80% Identity: iTF_00026349;