Aaln024386.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467711.1:48834414-48834893[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-09 3.3e-06 28.4 0.2 2 45 11 53 10 53 0.91
Sequence Information
- Coding Sequence
- ATGCCGAATAGAAAGAGAGCCATGTGGTCTGAGGCGAATCTCGTTGCAGAGTTAGAAGCAATAAGAGCTGGAAGCAGTATAAGTCAAGCTTCATTACGGTATGAAATACCTCGAACAACACTTGGACTACATTATCGCAGCCAAAATTCGGTTAAACGACTTGGAAGGAAAAGTGTTTTAAGTTTTGAACAAGAAAGAGATCTAGTTCGCAGTATTCATGAACTAGCAGAGGTGGGCATGCCAATAACCAGTAAAATAGTAAGAAGAAGTGTATTTTCGTATGCGATGATAATGAACATTCCTAATCCTTTTTCTGATACATCTAAATTAGCAGGTAGGAAATGGCTGAAATTATTCTTTGCAAGACATCCCGATGTGGCTAAAAGGAAGGCTCAGCAAATGAATCTAGCAAGAGCACAGAAAATGAATCCATTTATTGTAAAggattattttaagaaattaaaggaagtatttatttaa
- Protein Sequence
- MPNRKRAMWSEANLVAELEAIRAGSSISQASLRYEIPRTTLGLHYRSQNSVKRLGRKSVLSFEQERDLVRSIHELAEVGMPITSKIVRRSVFSYAMIMNIPNPFSDTSKLAGRKWLKLFFARHPDVAKRKAQQMNLARAQKMNPFIVKDYFKKLKEVFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436496;
- 90% Identity
- iTF_00436516; iTF_00436496;
- 80% Identity
- -