Aaln041350.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467715.1:33743460-33743774[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-10 1.5e-06 29.5 0.0 9 40 23 54 16 58 0.91 2 2 5.1 9.4e+03 -1.9 0.1 2 10 74 82 73 83 0.84
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATATGTTGCAAAGAACATTCCTAAGAAGTACAGCACTGAGTTACTGGACCAAGTACTTGAAGACATTCGTCGAGGTACTATGACTGCCCACAGAGCACACCAGCTTTATGGCATTCCGAGGATGACGTTGTATTCAAGGCTTAACGGTACTAAAGGTAAGGAAAAAGGTTGTGTTCGAGGTAGGACGACTGCGATTCCAGCAGCTGAAGAAGAAAAACTTGCTTCGGCTTTGAAGACAATGGAAAAATGGGGTTTCGGTTTGTCAAGAAAGGAAGTGTTGGAAGTAGTAAAAGTTGTATGTTGA
- Protein Sequence
- MPRKYVAKNIPKKYSTELLDQVLEDIRRGTMTAHRAHQLYGIPRMTLYSRLNGTKGKEKGCVRGRTTAIPAAEEEKLASALKTMEKWGFGLSRKEVLEVVKVVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416229;
- 90% Identity
- iTF_00416229;
- 80% Identity
- -