Aaln022332.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- retn_1
- Assembly
- GCA_950111635.2
- Location
- OX467711.1:17570013-17583075[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-20 4e-16 60.8 0.1 17 89 14 84 1 84 0.87 2 2 1.6 1.3e+04 -1.7 0.0 25 39 212 232 179 243 0.50
Sequence Information
- Coding Sequence
- ATGTTAACTCAGTGGAAGGAAAATTGTCAAAACGTTTTACGAACTCCCATCAACCGGCTACCGATAATGGCGAAGTCTGTGCTCGATCTCTACGAATTGTATAATTTAGTCATAGCACGTGGTGGCTTAGTTGATGTTATCAACAAAAAGTTATGGCAAGAAATCATAAAAGGATTACACTTACCTTCATCCATTACATCTGCAGCATTTACCCTTCGGACCCAGTACATGAAATACCTCTACCCTTACGAATGTGAAAAGCGACGATTAAGCACCCCTTCGGAGCTTCAAGCTGCCATCGACGGTAATAGAAGAGAAGGTAGAAGAAGCAGCTACGGTCATTTCGATTCCATGCAAAGATCTCCCAATTCCACTCTGCAAATATCGCCTCTGACGATGGTAGGGCATCAACATCAACAGCTGAACTCGCGTATGATTGGAACTGCCATGAGTCTTCACAACGGAACACATCCTAGTCATCCACAACCGATAATGCAGCCCCTGAACGGAGGACCCATATCAAGTTTGGCCCCTGGTGAATTCGAGTCGCGTATGATCGAATACATGAAGCTGTTAAACAAAGAAATGATATGTACCCCAATGCCAACCACACCTCCTCGCCAAGAAGACGTGTCTTCTCCACCCACCAACAGTTTAGAAATGTCACGTTTGGCGCTTTGGAACTTTTACAACAACACACAATCTCCCGCAGAACCACAAAAGGAACCCATCAACCTTTCGGAATCGTCTTCGTCGGGCGTTTTTAAGAGGGAACCTGAGTGCAGAGAGCCGTCACCGCCTCCCAAAAAGGCGGTGAAAGAAGAACAACCCGAATCTGTTTCACCGTCACCTTCACCTTcaacacatataaaaattaacagCAGAGGTGATGCCCGAAATGGAGACAACTCTTTGGTAGTGAGCATGGAATTAAACGGAATAACATATCAAGGAGTCCTCTTCGCTCAGAATTCACCGTCTAGAGGCAGAACGGCGATAGCTTCCTAA
- Protein Sequence
- MLTQWKENCQNVLRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPSELQAAIDGNRREGRRSSYGHFDSMQRSPNSTLQISPLTMVGHQHQQLNSRMIGTAMSLHNGTHPSHPQPIMQPLNGGPISSLAPGEFESRMIEYMKLLNKEMICTPMPTTPPRQEDVSSPPTNSLEMSRLALWNFYNNTQSPAEPQKEPINLSESSSSGVFKREPECREPSPPPKKAVKEEQPESVSPSPSPSTHIKINSRGDARNGDNSLVVSMELNGITYQGVLFAQNSPSRGRTAIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -