Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.89 8.3e+03 -2.4 1.6 15 19 144 148 143 148 0.81

2 5 0.015 1.4e+02 3.2 1.2 2 10 176 184 176 184 0.93

3 5 1.3e-05 0.12 13.0 18.1 4 19 192 207 190 207 0.93

4 5 3.7e-08 0.00035 21.2 11.2 1 18 243 260 243 261 0.97

5 5 0.00014 1.3 9.7 10.6 1 19 300 318 300 318 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.89	8.3e+03	-2.4	1.6	15	19	144	148	143	148	0.81
2	5	0.015	1.4e+02	3.2	1.2	2	10	176	184	176	184	0.93
3	5	1.3e-05	0.12	13.0	18.1	4	19	192	207	190	207	0.93
4	5	3.7e-08	0.00035	21.2	11.2	1	18	243	260	243	261	0.97
5	5	0.00014	1.3	9.7	10.6	1	19	300	318	300	318	0.98

Coding Sequence: ATGTTCTACAACAGTTCAATGCCCAAAAGTAGCCAGGACGTTAGAAATGGTAGGGGCGATGGTTCCAATAGGCGCGGCTGGGCTGGCAGCCAAAGGGTGCGTGCAACTGAGCGCAACAATATTGAGGATGAACAATATGCAAATACATATCTACAGTATAAGGAGGAGAAAATCAATAAAGAACCAAAACCGAGTCCTAGCAGGACTAAGAATCAAAAAAACGGGACCAACATTGGAGCGAACACGGAAATGACACAACGCGAGAGGCTCAGCGAGCAGTTAGATAAGGGTACTTTGGAGTGCCTGGTGTGTTGTGAGAGGGTCAAGCAGACCGATCAAGTGTGGTGGTGCTGCAACTGTTACCATGTGTTGCATCTCAAGTGCATTAGGAAATGGGCTTTGAGCAGTGCCATCGAGGGCAAGTGGCGGTGCCCGGCGTGCCAGAATGCGTCGAACGAGATTCCAATGGAGTACCGCTGCATGTGCGGCACGGTGCGCAACCCGGAGTACCAGCGCGGCTCGAGCGGCGCGCACACGTGTGGGCGCGCGTGCCAGCGGCCGCGCAGCTGCCCGCATCCGTGCACGTTGCTGTGCCACCCGGGCCCTTGCCCGCCCTGTCAGGCGACCATCAACAAACAATGTGGCTGCGGGGCAGAGTCACGATTGATTTTATGCAGCAGCAAGTTGCCTCAGGTGTGCGGACGCGAGTGTGGGAAGAAATTAGGCTGCGGCGTGCACACATGCAAGAAAGAGTGCCACGAAGGAATCTGTGAGGAATGCCTTGAGACAGTTACACAAATGTGCTACTGCGCGGTGGGCAAGACGCGCGTGGTGGCGTGCGAGCGCGGCGTGACGGCGCAGTGGGCGTGCGGCGCGGAGTGCGCGCGCGTGCTGGCGTGCGGTGCGCACGTGTGCCGGCGCGCCTGTCACGTGCCGCCGTGCGCCGACTGCCCGCTGCGCCCCGACTGCGTGCGCGCCTGCCCCTGCGGAAAGACCAGGTACCCGTCTTCTCGAAACtttattatgtgtatgtag
Protein Sequence: MFYNSSMPKSSQDVRNGRGDGSNRRGWAGSQRVRATERNNIEDEQYANTYLQYKEEKINKEPKPSPSRTKNQKNGTNIGANTEMTQRERLSEQLDKGTLECLVCCERVKQTDQVWWCCNCYHVLHLKCIRKWALSSAIEGKWRCPACQNASNEIPMEYRCMCGTVRNPEYQRGSSGAHTCGRACQRPRSCPHPCTLLCHPGPCPPCQATINKQCGCGAESRLILCSSKLPQVCGRECGKKLGCGVHTCKKECHEGICEECLETVTQMCYCAVGKTRVVACERGVTAQWACGAECARVLACGAHVCRRACHVPPCADCPLRPDCVRACPCGKTRYPSSRNFIMCM

Sequence clustering based on sequence similarity using MMseqs2