Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.6e-06 0.09 13.4 11.6 1 19 26 48 26 48 0.89

2 11 1.2 1.1e+04 -2.8 1.7 6 10 78 82 78 82 0.95

3 11 5.6e-06 0.052 14.2 7.5 1 14 88 101 88 101 0.97

4 11 0.14 1.3e+03 0.1 0.3 4 10 103 109 102 112 0.91

5 11 5.1e-07 0.0048 17.5 14.1 1 19 115 133 114 133 0.94

6 11 0.93 8.7e+03 -2.5 0.3 6 10 162 166 161 167 0.74

7 11 2.2 2.1e+04 -3.7 15.7 1 18 172 188 172 189 0.81

8 11 0.087 8.1e+02 0.8 1.1 8 13 194 199 193 200 0.84

9 11 2.1 2e+04 -3.6 0.8 15 18 215 219 214 220 0.54

10 11 1.7e-08 0.00016 22.3 14.2 1 17 225 243 225 249 0.83

11 11 0.00024 2.3 9.0 8.7 1 14 255 267 255 279 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.6e-06	0.09	13.4	11.6	1	19	26	48	26	48	0.89
2	11	1.2	1.1e+04	-2.8	1.7	6	10	78	82	78	82	0.95
3	11	5.6e-06	0.052	14.2	7.5	1	14	88	101	88	101	0.97
4	11	0.14	1.3e+03	0.1	0.3	4	10	103	109	102	112	0.91
5	11	5.1e-07	0.0048	17.5	14.1	1	19	115	133	114	133	0.94
6	11	0.93	8.7e+03	-2.5	0.3	6	10	162	166	161	167	0.74
7	11	2.2	2.1e+04	-3.7	15.7	1	18	172	188	172	189	0.81
8	11	0.087	8.1e+02	0.8	1.1	8	13	194	199	193	200	0.84
9	11	2.1	2e+04	-3.6	0.8	15	18	215	219	214	220	0.54
10	11	1.7e-08	0.00016	22.3	14.2	1	17	225	243	225	249	0.83
11	11	0.00024	2.3	9.0	8.7	1	14	255	267	255	279	0.82

Coding Sequence: ATAGACCCGGGCCAACGCAAGAAGTGCACGGATCCCATTCCATTGTGCGACAACATCTGTGCCAAACCTTTAAAATGCGGGCCCCAGGAAGACAGACACTTTTGCAAGATGCAGTGCCATGAAgGAGAATGTCCCGTGTGCCCGGACTCCACCCACCTTCAGTGTCGCTGCGGCCACTCGACGCGCGAGTTGCCGTGCGCCGAGCTGCTGAGCATGGAAAACGGTGTGCTGTGCCAGCGCAAGTGCAATAAGaaaatgaaCTGTGGCCGACACCGGTGTCGCGAGGTGTGCTGCGACGGCAACGAGCACATGTGCACGGTGGTCTGCGGCCGCAGCCTGTCCTGCCAGCACCACCGCTGCGAGGAGTATTGCCACGCCGGCCGCTGCGCGCCCTGTCCCCGTCTCATTTTCGAGGAGATCCGGTGCGAATGCGGCGCGGCGGTGCTGCTGCCGCCCGTGCGCTGCGGCGTGCGGCCGCCCGCGTGCACGGCGCCGTGCGGGCGCGTGCGGCCCTGCGGCCACCCGCCGCACCACTCGTGCCACGCCTCCGACTGCCCGCCCTGCGTCGTGCTCACCACGCGCGTCTGCCACGGCGGACACGAGGAAAGGAAGACCATTCCGTGTTCGCAAGAGGAGTTCTCGTGCGGTCTGCCCTGCGGGAAGCCGTTGCCCTGTGGCAAGCACACTTGCATAAAAATTTGTCACAAGGGGCCCTGTGATACTGGCAAATGCACCCAGCCGTGCACGGAGAAGCGCGCGTCGTGCGGCCACCCGTGCGCGGCGCCGTGCCACGCGGGCGCCGCGGACGCCGTGTGTCCGAGCGCGGCGCCGTGCCGCCGGCCGGTGCGCGCCACGTGCCCGtgcggccgccgcgccgccgagCGTGCTTGCTGCGACAACGCGCGCGACCTCGCCCGAATGATGAGCTCATTGACCGTGGCCAAGATGCAGGAGGGCGGTTCGGTCGACTTGAGTGATGTCCAACGTCCCGCCAATATGCTTAAGAC
Protein Sequence: IDPGQRKKCTDPIPLCDNICAKPLKCGPQEDRHFCKMQCHEGECPVCPDSTHLQCRCGHSTRELPCAELLSMENGVLCQRKCNKKMNCGRHRCREVCCDGNEHMCTVVCGRSLSCQHHRCEEYCHAGRCAPCPRLIFEEIRCECGAAVLLPPVRCGVRPPACTAPCGRVRPCGHPPHHSCHASDCPPCVVLTTRVCHGGHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKICHKGPCDTGKCTQPCTEKRASCGHPCAAPCHAGAADAVCPSAAPCRRPVRATCPCGRRAAERACCDNARDLARMMSSLTVAKMQEGGSVDLSDVQRPANMLK

Sequence clustering based on sequence similarity using MMseqs2