Basic Information

Insect: Agara michaeli
Gene Symbol: ush
Assembly: GCA_018245675.1
Location: DWDX01000910.1:8301-10908[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0057 0.46 11.7 0.2 1 20 116 135 116 137 0.95

2 9 0.00043 0.034 15.2 2.2 1 23 173 195 173 195 0.96

3 9 0.12 9.6 7.5 0.2 3 20 226 243 225 245 0.92

4 9 0.018 1.4 10.1 3.9 2 21 483 502 482 503 0.95

5 9 0.0075 0.6 11.3 0.2 3 20 532 549 530 551 0.91

6 9 1.3 1e+02 4.3 0.0 2 23 579 600 578 600 0.94

7 9 0.0089 0.71 11.1 1.3 1 23 606 628 606 628 0.99

8 9 0.46 37 5.7 0.7 1 23 666 689 666 689 0.95

9 9 2.2 1.7e+02 3.6 0.7 3 20 723 740 722 742 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0057	0.46	11.7	0.2	1	20	116	135	116	137	0.95
2	9	0.00043	0.034	15.2	2.2	1	23	173	195	173	195	0.96
3	9	0.12	9.6	7.5	0.2	3	20	226	243	225	245	0.92
4	9	0.018	1.4	10.1	3.9	2	21	483	502	482	503	0.95
5	9	0.0075	0.6	11.3	0.2	3	20	532	549	530	551	0.91
6	9	1.3	1e+02	4.3	0.0	2	23	579	600	578	600	0.94
7	9	0.0089	0.71	11.1	1.3	1	23	606	628	606	628	0.99
8	9	0.46	37	5.7	0.7	1	23	666	689	666	689	0.95
9	9	2.2	1.7e+02	3.6	0.7	3	20	723	740	722	742	0.91

Sequence Information

Coding Sequence: atgtgctatttattttcaggTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGAACGCCGAGCTCTGGTGGCGAGCGAGCCGCGTCCAGCAGGGGCGCATCGCCAGCTTCAGAGGGATCCCTTGCCGCTTCGCCGCCAAGGTTACGTCTCAACACTAGCCTCGCTACAGATCCAGCGCTGGCACCTCAAGCCACATCGTTAAAACATGAGCCACCTTCTCCGTCTCCTCCACCACCTCCAGCCCCTCCGACAAGAGAAAGTCTAGCATTATCAGCTGCAGCTGCAGCTGCCTTTCCTACGCTGTTTCCAGTAACGACTGCGCCTGGATACACGTGCCAACCTTGCGGCATTCGTTATTCTTCATTGAGTACTTTACAGGCACATCAGGAACATTATTGCTCAAAGAGAAGGCCAAAGCCAGATTCTACGGATGGTCCTACAGATGCAGCGGATGACTCGAGTAGTGAAGCAAAAACGCCGAGACCTCCTGGAAAACAACATGCCTGCACGTACTGCTCGTATAGCGCCGACAAAAAAGTTAGCTTAAATCGCCATATGCGTATGCACTCATCTTCGCCGATTAGCAGCGGAACTCCGGCGCCGACGCCTacttcaaatggtgaaagcgCAGAGGTACCGACGCCTCAAGATCGATACTGTGTTGATTGCGATATCCCTTTTAGTTCAGTAAAAACGTATCGAGCTCACAAAGCTCATTACTGCAATACAAGACAAGTGGTCAAACAAGTCCTGGCTGCTGCCAGAGGAGGCTCTGCTACGTCCGGTTCCGCACCACCGTCTCCAGGAACAACTCCTCCATCTCAAAGCCAGTATGCTATTGCGTTACCAACAAATCCCATTCTTATAGTCCCATATTCTGTATTACGAAGCGCCAGCACTCTTCCCGGCGCAACATTGCCAGACCCAGACACTCCATGCTTTCTGTTACCAAATGGAACTTTCCAACCTATTACTCGAGGCTTACTAAATATGAATACGGAAGGAAAGGAACCAGAAGTGTTGAAAGCAGCAAACCGACCTCGTGAGCCCTCACGAGACGGCGCCACACCATTGGACTTGAGTGTGCGTCGTTCGCCAGAGTCTGTGACCACTGATGATCACGAGAAAGAAAATAGAATACGATCAGCAACACCGGAACAAATTGTTTGTGCACCATCTCTTCCCGGTTCTCCAGGAACACCGTCACCTTTAAGACGGTCGTCATCACCTAGTGCAGAAAGTTCACCAAAAAGACGACGGCGCAATTCAAGAGGTCCCACGCCAAAACCACCTAGTGTACCTTCACCGCCGGAGGAAAAATTCGCCCCAATTGTGCCCCCGCCGATCCTTCCTCCGCTCGCCTTACGACTTGCCTCCGAGCTACCTGTCACTGCATCGCCCCAAGTCTTAGTAAAGCAAGGTCCGTCGAAATGCAAAGAGTGCAACATTGTTTTTTGCAAATACGAAAACTATCGTGTACACAAACGACATTATTGCTCGGCTGGCGGCggagaagagagagagagtccAGCTCCACCCGAGCTCGGTCCGCCGCCGCAATATCGACAGCTCATTTGCATGGCTTGCGGCATCCATTTCAGTTCACTAGACAACCTCACAACCCATCAGTCATTCTATTGTACGAAGCGAGAAACGCGATCTCCAAGAAGCATTCCCGAGGTGCCGCGGCCGTCATCGGGATCTGAAGGTGGATGGAAATGCCCGTGCTGCGACGTGGTGTCCCccacggcggcggcggctcaACGTCACATGGAAGCGCACGCTGGCGTCAAAGCCTTCCGCTGCACCATCTGCCGGTACAGAGGGAACACGCTGCGTGGTATGCGCACTCATATACGCATGCACTTCAGAGAAAAGCCATCAGATTTACAGGAGGAGAGCTATATTTCCTGCGTCGTTGAAGAGGATAATCGCGAAGCGACGTCCCCCAGCCCTGCCTTGGGCGGCGACCGGGTCCACCGGTGCGGGAGCTGCGCCTACACCTCCACGTACCGGGGCAACGTGGTCAGGCACGCGAGGCTCGTCCACGCGACCGACAACCCGGAACCCGAGGAGCAAACGTCACCCATCCCCCCTGCGGACATCAAAAAAGAAGTAGAGCCGGAAGCAGAAGAAACGCCGAATTACTGCAAATCGTGCAACATATCGTTCCAATACGTGAACACGTACAAAGCTCACAAGCAGTTCTACTGCAGCGGCGCCAACCAGGAAGCGGCCGCCAACAACAACGTGCCGGCGCCGAGGGTCAACGACGCGCCGGTCCTATGA
Protein Sequence: MCYLFSGEDEEWGNESEAMPGEPRTPSSGGERAASSRGASPASEGSLAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPPPPAPPTRESLALSAAAAAAFPTLFPVTTAPGYTCQPCGIRYSSLSTLQAHQEHYCSKRRPKPDSTDGPTDAADDSSSEAKTPRPPGKQHACTYCSYSADKKVSLNRHMRMHSSSPISSGTPAPTPTSNGESAEVPTPQDRYCVDCDIPFSSVKTYRAHKAHYCNTRQVVKQVLAAARGGSATSGSAPPSPGTTPPSQSQYAIALPTNPILIVPYSVLRSASTLPGATLPDPDTPCFLLPNGTFQPITRGLLNMNTEGKEPEVLKAANRPREPSRDGATPLDLSVRRSPESVTTDDHEKENRIRSATPEQIVCAPSLPGSPGTPSPLRRSSSPSAESSPKRRRRNSRGPTPKPPSVPSPPEEKFAPIVPPPILPPLALRLASELPVTASPQVLVKQGPSKCKECNIVFCKYENYRVHKRHYCSAGGGEERESPAPPELGPPPQYRQLICMACGIHFSSLDNLTTHQSFYCTKRETRSPRSIPEVPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPSDLQEESYISCVVEEDNREATSPSPALGGDRVHRCGSCAYTSTYRGNVVRHARLVHATDNPEPEEQTSPIPPADIKKEVEPEAEETPNYCKSCNISFQYVNTYKAHKQFYCSGANQEAAANNNVPAPRVNDAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00288432;
80% Identity: -