Amic004168.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01002139.1:6031-14583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.0014 19.5 3.8 1 23 266 288 266 288 0.99 2 12 4.2 3.4e+02 2.6 0.0 1 23 295 318 295 318 0.74 3 12 4.3 3.4e+02 2.6 2.6 1 19 322 340 322 344 0.83 4 12 0.011 0.9 10.7 1.2 1 23 349 372 349 372 0.94 5 12 0.00065 0.052 14.6 0.5 1 23 376 399 376 399 0.96 6 12 0.014 1.2 10.4 0.3 1 20 410 429 410 431 0.95 7 12 0.0055 0.44 11.7 0.1 3 23 444 464 444 464 0.97 8 12 0.00018 0.014 16.4 0.7 2 23 474 496 473 496 0.96 9 12 1.1e-05 0.00086 20.2 1.1 2 23 516 537 515 537 0.97 10 12 0.00028 0.023 15.8 3.4 1 23 543 565 543 565 0.98 11 12 1.2e-05 0.00093 20.1 4.1 1 23 571 593 571 593 0.94 12 12 3.2e-06 0.00025 21.9 2.5 1 23 599 622 599 622 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAATGCTAGCGTGTCGTGTCTGTTTGGcgacagataatataaaactgtacaGTTTGGTCAAATACCAATTGTCTCACGCATACGAAATACTAACTGGCCACCGAGTATCGGCGAGAGATGGCCTGCCGCAGCACATCTGCAGCTACTGCAGCGCGTTGCTGCTCAAGTATGTCACGTTCAAGGAGAAGTGCTGCAATTCCCAGGACCTGCTCAAGTATTGTCTCAACGAGCAGAGTGAGCTGTCCATGGACTACATCCGTTCCCTGAATAGGGAGGTGCACGATGTCATTTTACCGTACACCGTCAACAGCAACATACCAACAATCTCCTTTGAACATGAAGAATCATCAATAAAAGAGGAGAGGGAATTGCAAATATTCTGCCACGAAGTACCTATAATCGATGCCTTCGATGGAATCAAGCAGGAACACGAGGACAAGGAAACGGAGAAACCGAGACGGAGCAAACggaaaaagaaattgaaagaTAAGCGAGGTCAGTTCGACGTTGTTGCGATCAAATGCGAGAAGACAATCGGAGAAGCGAATAGAGACCAACCGCTTGATCAAACTGTTGATCAAACTGTGGATCAAACTCTCGATGAAACCCTACATCAAGTGTGCGCTGATGAAGGTGTAGATGAAATACAAGATGTGATCTATGACAGTGATCCCCAAGATCCTGAGTTTCAACATTTGAAGGACGTGGAAATAGTGAATTTGACGAGACAGGAACAGTTGCAGGAGATAGCTGCCAGGAAGACCTCGTTCAACTACACCAACTCGGCTTACAAGTGCAATAAGTGTTATAAAGGTTTCATAACCGATTCCACATTCAGAAACCATATGCGGAGGCACGATCCTAAAAATGGTATGTACGAGTGTGACATATGTTACTCGAGATGGCCGGAGAGCAGGGCTCTGAGGGCGCATATAGTCAACGCACACAAGCGGAAGTTCATCTGCAAGCTCTGCGATTATGTCTCCAGGTCCAGTTACCGTGCGAAGGAGCACTGCAAATGGCATAGCGGCTTCACGTTCGACTGCAAGATATGCGGAGCCTCCTTCGCCAAATCGACGAGTCATCTAACACACATACGACTCCAGCATCCGTCGAACCATTCGTGCGAGATTTGCGGCGAGTCGTTCGTGGGGGAGTTCGGCCTGAGGATGCACAAGAAGAGGGCGCACGGGGACTGCGATAACACCACATCATTGATCTTCAAATGCAGCCAGTGCTCCACGGATTTCCAGAACGTACAAGCCCTCACTCGCCACCTGGAGCTGGCCAATAATGGTGTCTGTGATACGGACTTACGATGGTGCCGTCGCTGCGGCGAGGGGTTCCCCTCGAACGACGAGCTGCTGGAGCACGTGAAGGGGCACCAAGACGGGGACGAGGTGGACGCGGTGCGCTGCGATGATTGCAAGCGCAGCTTCACCAGCGAGAAGTCGTACGCGATCCACTACCAGCGCGTGCACCTCGGCGTCAAGCTCAAACAGAGCAAGCCGTGCTTCAAGCGGCCCTCGGAGAGCGTCGTCTGCGAAATATGCGGCAAGAAGTGCATCACGAAGGCGACCCTCAGATACCACCAGCGGATACACACGGGCGAGAGGCCCTTCCACTGCACCGAGTGTCCCAAGAAGTTCTCCGTGTTCCAGCGGTTGCAGATCCATCTCCGCACGCACACGGGAGAGTGTCCGTACAAGTGCAAGCACTGTCCGAAGGCTTTCAAGCACAAGGCCGCCCTGAACAGGCACGACCGGGTGCACACGGGAGCGAAGCCCTACATGTGCTCCCACTGCGGCAAGACCTTCTCACAGTCCAACTCGATGAAACTACACGTCAACACTGTGCATTTGAAGCTGCCGGCACCCTACAGGAGCAGACGGAGCAATAAGAACTGA
- Protein Sequence
- MEEMLACRVCLATDNIKLYSLVKYQLSHAYEILTGHRVSARDGLPQHICSYCSALLLKYVTFKEKCCNSQDLLKYCLNEQSELSMDYIRSLNREVHDVILPYTVNSNIPTISFEHEESSIKEERELQIFCHEVPIIDAFDGIKQEHEDKETEKPRRSKRKKKLKDKRGQFDVVAIKCEKTIGEANRDQPLDQTVDQTVDQTLDETLHQVCADEGVDEIQDVIYDSDPQDPEFQHLKDVEIVNLTRQEQLQEIAARKTSFNYTNSAYKCNKCYKGFITDSTFRNHMRRHDPKNGMYECDICYSRWPESRALRAHIVNAHKRKFICKLCDYVSRSSYRAKEHCKWHSGFTFDCKICGASFAKSTSHLTHIRLQHPSNHSCEICGESFVGEFGLRMHKKRAHGDCDNTTSLIFKCSQCSTDFQNVQALTRHLELANNGVCDTDLRWCRRCGEGFPSNDELLEHVKGHQDGDEVDAVRCDDCKRSFTSEKSYAIHYQRVHLGVKLKQSKPCFKRPSESVVCEICGKKCITKATLRYHQRIHTGERPFHCTECPKKFSVFQRLQIHLRTHTGECPYKCKHCPKAFKHKAALNRHDRVHTGAKPYMCSHCGKTFSQSNSMKLHVNTVHLKLPAPYRSRRSNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -