Amic009453.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- Hinfp
- Assembly
- GCA_018245675.1
- Location
- DWDX01006812.1:2175-4790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00093 0.075 14.1 0.3 1 23 28 51 28 51 0.97 2 19 0.4 32 5.9 0.1 2 23 77 99 76 99 0.92 3 19 0.13 10 7.4 4.3 3 23 124 144 122 144 0.96 4 19 0.013 1 10.5 0.4 1 23 148 170 148 170 0.96 5 19 0.00081 0.065 14.3 0.2 1 23 176 199 176 199 0.97 6 19 0.0014 0.11 13.6 1.3 2 23 207 229 206 229 0.95 7 19 1.1e-06 8.9e-05 23.3 1.3 2 23 235 257 234 257 0.97 8 19 0.43 35 5.7 0.9 1 23 263 286 263 286 0.90 9 19 0.04 3.2 9.0 0.3 1 14 292 305 292 307 0.90 10 19 1.6 1.3e+02 4.0 1.8 1 23 407 430 407 430 0.93 11 19 2.1 1.7e+02 3.6 0.1 2 23 457 478 456 478 0.93 12 19 0.0065 0.53 11.5 3.8 2 23 501 522 500 522 0.96 13 19 0.0019 0.15 13.2 0.5 1 23 526 548 526 548 0.98 14 19 0.0043 0.34 12.1 0.5 1 23 553 576 553 576 0.94 15 19 0.14 11 7.3 1.9 2 23 584 606 584 606 0.96 16 19 0.025 2 9.6 0.5 1 23 613 636 613 636 0.96 17 19 0.00034 0.027 15.5 0.6 2 23 643 664 642 664 0.97 18 19 4.9e-06 0.00039 21.3 2.3 1 23 670 692 670 692 0.98 19 19 9.9e-05 0.0079 17.2 2.0 1 23 698 721 698 721 0.98
Sequence Information
- Coding Sequence
- ATGCAGAGACAGTGGCACAATTTGACGACACTGCTCAAGTACTCGAACGCGACGCCGTTCAAGGACAGGAACGACGCGGGCTACATATGCGCTTACTGCTACAAGACTTATCCCGATCCGGGCGTACTGAGGACGCACACGAAACGGGATCACGTGAAAGAGAAACCGTCTTACAAGCCCGGTTCGGGCATGAGCAGCTTCGTGGCGTTCCTGGATATCGTCGACCTAAAGTGCACCATATGTAATATGCCCATGGACAGCCTGAAGACGCTAACGGAACATCTGGTGAGCGATCACGAGAAGAAGTACTACTTGGAACTGACCGATTACTTTCAGCCGTTCAAGCTGACCAACGAACAGCAGATGAACTGCTGTCTATGCAATGAAATATTCCACAACATGAAGTTGCTAATGCAACACATGAACAATCACTTTAGGAATTTCATTTGCACTATATGCGGCGCCGGTTTCGTGAACAGCTTTCGACGCAATCGTCACGAGACCACGCACGTGAAGAAGTCGAGTTTCCCTTGCAAGTATTGCGGCCAGGTGTTCGCGGCCGAGTCGAAGAAGAAGGCCCACGTTAACACGGAACACAAGGGCATCGCCGGCGATAGCGTGTGTCAGATATGCAAGGCGCGGTTCAAGAATTACTATCAGAAGACGCGGCACATGATGCAAGTGCACAACGTCGAGGGGATCAAGTGTGACAAGTGCGACAAGAAGTTCAATCTGAAATCGAACCTGATGCTGCACATGCGGAGCGTGCACTTGAAGGAGCGACCGTACGAGTGCTCGGTGTGCAACATGGGTTTCTTTATCAAGCGGCACATGGTCGGCCACTACATGGCGACGCACACGAACGAGAGGAAATTCAAATGCGACACGTGTGGCAAGGCGTACGCCACGCAGAACAGTGTTGGGGGCGACCGATCTCTATTAAAGGCGAAAATAGAGCATCTAATAAAAGCTAAACCTATTCATTTAAATGCATCGTCCAATCTCAAAGACGATTGGAACATAACTATAACTAAGAAGAACGAACCGAAAATAGCCAAACGCACgcagaatattataaaaccgGTTGCAATGAGATTGGCTTTTAATACGAAATCGGGAAGTCACATTGTCACggaattacataaacatttacataacgTTGACACTATTTTATCGCACTCGAACGCTACGCCGATTAGGAGTCACAACGGTATCGGTTATGTGTGTGGATTCTGTACTGCTTGCCATGAAAATCCGGTCGATCTCAAGAAGCACACTCTAGAGACCCATCTTAATTCAGAAACTGGCGAGCACACGAGCAGTTCGCAACTCACCACGCATATAGTTAAGCTTGACATTACAGATCTACGGTGTACTGTTTGTGACGTAGACGTAGATGGATTTGAGCGTTTGATTAATCATTTGAGAGAtcacaacaaaataatatacagcGACATCGACAATCGCATAGTGCCTCTTCGCTTTAACAAGGGCACGTTGTGCTGTTGTATTTGCTCTGTCGCGTTTGAGAGTTTCAAGAGTTTGAGGGTGCATATGAACACACACTACAGAAACTTCGAATGCGAACAATGCTCCGCGCCGTTCATGACCCGCCGAATGTTGCAGAATCATCGCGCTCGTCATGTCAAAGGTCGATACGAATGCTCGCTGTGCTCTAAAGTGTTTGCAACGCAAATCGGCAAGCGTAACCACGAAAGGTTCGTTCACAGGGAGGGCAACAAGCGAAATAGATGTCCGTATTGCGGTGACAAGTTTGTCAGCTACAAGTGTAAACGTGAGCATATGGTGACCGAGCACGGCGTCGCGCCGCGCGTTTACAGTTGTATGGCGTGCGATGGCACCTATGCGACGAAAAGCAAGCTGTCGCTTCACACGAAACGCGTTCACTTGATGCAACGCGACGTGAAGTGCAACGTCTGCAACATGACATTCTTCACCGGGAAGGAGTTGGCGAATCACATGTTGAAGCACACGGGCGAGAGGCGGCACAGGTGCGACGTGTGCGCCAAGTCGTTTGGCAGGAAGTACACTTTGAAAGAACATATGCGCATACACGAGAACGATCGCCGTTTTAAATGTGCGTACTGCGGAATGGCGTTCGTTCAGAAGTGCTCGTGGAGAGGACACATGCGATCAAAACATTTGGACGTTATATAA
- Protein Sequence
- MQRQWHNLTTLLKYSNATPFKDRNDAGYICAYCYKTYPDPGVLRTHTKRDHVKEKPSYKPGSGMSSFVAFLDIVDLKCTICNMPMDSLKTLTEHLVSDHEKKYYLELTDYFQPFKLTNEQQMNCCLCNEIFHNMKLLMQHMNNHFRNFICTICGAGFVNSFRRNRHETTHVKKSSFPCKYCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMVGHYMATHTNERKFKCDTCGKAYATQNSVGGDRSLLKAKIEHLIKAKPIHLNASSNLKDDWNITITKKNEPKIAKRTQNIIKPVAMRLAFNTKSGSHIVTELHKHLHNVDTILSHSNATPIRSHNGIGYVCGFCTACHENPVDLKKHTLETHLNSETGEHTSSSQLTTHIVKLDITDLRCTVCDVDVDGFERLINHLRDHNKIIYSDIDNRIVPLRFNKGTLCCCICSVAFESFKSLRVHMNTHYRNFECEQCSAPFMTRRMLQNHRARHVKGRYECSLCSKVFATQIGKRNHERFVHREGNKRNRCPYCGDKFVSYKCKREHMVTEHGVAPRVYSCMACDGTYATKSKLSLHTKRVHLMQRDVKCNVCNMTFFTGKELANHMLKHTGERRHRCDVCAKSFGRKYTLKEHMRIHENDRRFKCAYCGMAFVQKCSWRGHMRSKHLDVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -