Amic018295.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01020589.1:1-2557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4e-06 0.00032 21.6 1.5 1 23 9 32 9 32 0.96 2 18 0.0014 0.11 13.6 0.1 1 23 37 60 37 60 0.96 3 18 0.00063 0.051 14.7 0.1 2 23 69 91 69 91 0.89 4 18 1.1e-05 0.00092 20.2 2.1 2 23 100 122 99 122 0.95 5 18 0.0011 0.092 13.9 0.1 2 23 130 152 130 152 0.96 6 18 0.062 5 8.4 3.9 2 23 161 183 160 183 0.95 7 18 0.00062 0.05 14.7 5.0 1 23 189 212 189 212 0.97 8 18 0.00029 0.023 15.7 1.9 1 23 220 242 220 243 0.95 9 18 0.023 1.8 9.8 0.0 5 23 255 274 253 274 0.95 10 18 4.3e-05 0.0035 18.3 1.1 3 23 304 325 302 325 0.97 11 18 1.7 1.3e+02 3.9 0.2 3 21 334 352 332 353 0.93 12 18 0.4 32 5.8 2.0 1 23 361 384 361 384 0.93 13 18 0.023 1.8 9.8 4.4 2 20 403 421 402 425 0.94 14 18 3.6e-05 0.0029 18.6 2.0 2 23 432 454 431 454 0.96 15 18 0.18 14 7.0 1.6 3 23 463 484 462 484 0.94 16 18 0.0069 0.56 11.4 1.2 1 23 491 514 491 514 0.98 17 18 0.029 2.4 9.4 0.9 1 22 521 542 521 542 0.97 18 18 0.0021 0.17 13.0 1.7 2 23 557 579 557 579 0.96
Sequence Information
- Coding Sequence
- AAAGTGCACGCGACACCATCAGAATTCATTTGCAACTATTGCGACAGATCCTTTTCGCGTAAATACAACATCGTGAACCACATTCAGAACTATCACATAAACAAGTCGTTCTTCTGCGAGATCTGCGAACAGAAGTTCGCGGGACCGACGGGCCTCCAGCAGCACCTGATCAGAGGCCACAACAGGCAGAATCAGCCGAATCCGCAGTGCGACATATGCGGGAAGACGTTTACACGAAAACTGAACATAATACCTCATTTGGCGACCATCCATTCCATGGGCGTGGTGCCGAGCGTGACGTGCAAGGTGTGCCAGAAGAAGTTCACCACGGAGAGGAACTTGAAACGTCACGTGAGCAAGCTGCACAGCGCCGACCTGGAGAATCCCAGCTGCGATGAATGCAACAGAGTGTTCGGGGTGAGGCAAGCGCTGATAGACCATATCAAATCGGTTCACAATGTGCCCGAGGATAGTATCAGCAGCTGTCACATGTGCGATCAGGTTTACTGCTGGAGCAGAACCTTGAAGCGCCATTTGGAGATGTATCACGGCGTTAAGGACGAATTCCAGTGCGGGTGCTGCGAGAAGGCGTACACCACGAAACACAGCTTACGGCGCCACGTGAGGACCATCCACGGCGAGGATCTGCCCGACGAGTTCATTTGCGAATACTGTTCGAAGATATTTACCAACAAGTCCGCAATAGATAAGCACGTGTCGCGGCATCACAGAGACGTCCCCAGAAAGACTCAGTTCTCGTGCGATTGCGGAAAGGAGTTTGCCGAAGAGCCGGCACTGAGACAGCACATAAAGCTGGAGCATCCGTTCAATGTTTTCTACGAATACTGCAAGAATTATTTGCTCCAAACGGTCAGGCGCGAAGAGTTGAGGTCGAGGAACGGTTTCGGTTGTGAGGTGTGCTTCAAGAAGTTCCGGTCCTTGTACGACTTGAGGATCCACATGAAGTCGTACCACGACGTGCGGCTGTCGCTGTCCAACTGTTACGTGTGCTTCACGAAGTTCTTCAGCGAGGAAGCGATGGTGCAGCATCAGAAAATCTGCACGCCCCCGAGCAACGTCCACCGGTGCGGCGGCTGCGAAAAGCTGTTCACCTCGGAGCTGAGCCTCCAGTTCCACACCAAGGTGTTCCATCCGCGGACCGAAGGCGACAGCGTGACGGGCGCAAATCAGGCGTCCGGCCATTTGAAGTGCGTACACTGCGCCAAGGAGTTCAAATCGCGACGGAACATCAAGAAGCACATGGAGTGCATGCACCTCGGTGTTCACAGAGTCAAGTGCTTGGAGTGCGATACGTTCTTCAAGGAGAAACGTAACCTTCGGAAGCACATTCGGCTGAAACACAGCGATTGCTCCACGTTCCCGCTGTGCGAGTTTTGCGATAAACGCTTCGAGTCGGCGAAGGCCTGCAAGGACCATCTGCAGCAGGCGCACGCTTACGTCACCGACACGTACCCGTGCGAGGTCTGCTCGGTGTCGTACAGCTGCAACGACTCGTTGCTCCTGCACATGAAAACGAAGCACCTGGAGGAGGAGGGCGTGTTCAAATGCGAGGACTGCACCCTCGTCGTGAAGGGTTGCGACGCGTTCGAGAAACACAAGCGCACGTGTCGAGTAAATGTGACCGCTGGGTCGGAACAAAGCGTCCCGAGGTGCGTCATATGCATGAAGGACTACAGTTCCCAGAAGACCCTGAAGAGGCACATAAGGAATTTCCACGAGAGTTTCGACGTGGACCAGCTGGCGGCGCTCGGTTTCAGCAGGCGGCCGCTCTCCGTGGACTGCGACAGTTGCTCGAAGAGGTTCCTCGACGAGGACCTCGCGGATAAGTATCTTAGGTGCAAGAACGACGTTCGGTCGATGGTTTTCAAGTGTGACGCGTGCTCCGCGGAGTACAATGTCCTCGAGTTCGCGGTGCAGAGGCACAGGAGTGCGATGGTGAGTCGCAAACGTAAGCAGCCGTGGTACGATATAAGCGATGAGGGGGGATCCGAGAAGTCCGCCGCGCCCAAGGTGGTCGATGAGATCGATCTGGACAGCGCCAGCGACGTCCGCTCTGACAGTTCATCCGatgttgaaataatttga
- Protein Sequence
- KVHATPSEFICNYCDRSFSRKYNIVNHIQNYHINKSFFCEICEQKFAGPTGLQQHLIRGHNRQNQPNPQCDICGKTFTRKLNIIPHLATIHSMGVVPSVTCKVCQKKFTTERNLKRHVSKLHSADLENPSCDECNRVFGVRQALIDHIKSVHNVPEDSISSCHMCDQVYCWSRTLKRHLEMYHGVKDEFQCGCCEKAYTTKHSLRRHVRTIHGEDLPDEFICEYCSKIFTNKSAIDKHVSRHHRDVPRKTQFSCDCGKEFAEEPALRQHIKLEHPFNVFYEYCKNYLLQTVRREELRSRNGFGCEVCFKKFRSLYDLRIHMKSYHDVRLSLSNCYVCFTKFFSEEAMVQHQKICTPPSNVHRCGGCEKLFTSELSLQFHTKVFHPRTEGDSVTGANQASGHLKCVHCAKEFKSRRNIKKHMECMHLGVHRVKCLECDTFFKEKRNLRKHIRLKHSDCSTFPLCEFCDKRFESAKACKDHLQQAHAYVTDTYPCEVCSVSYSCNDSLLLHMKTKHLEEEGVFKCEDCTLVVKGCDAFEKHKRTCRVNVTAGSEQSVPRCVICMKDYSSQKTLKRHIRNFHESFDVDQLAALGFSRRPLSVDCDSCSKRFLDEDLADKYLRCKNDVRSMVFKCDACSAEYNVLEFAVQRHRSAMVSRKRKQPWYDISDEGGSEKSAAPKVVDEIDLDSASDVRSDSSSDVEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -