Amic006110.2
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- Zfy1
- Assembly
- GCA_018245675.1
- Location
- DWDX01003611.1:5836-9921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.4 2.7e+02 2.9 0.0 1 23 182 207 182 207 0.74 2 15 0.092 7.4 7.9 2.7 1 23 263 285 263 285 0.92 3 15 0.3 24 6.2 0.2 2 23 323 345 322 345 0.95 4 15 1.4e-06 0.00011 23.1 1.5 2 23 373 394 373 394 0.98 5 15 1.7e-06 0.00014 22.7 1.2 1 23 401 424 401 424 0.98 6 15 0.38 30 5.9 0.0 2 23 431 452 430 452 0.93 7 15 1.4e-05 0.0011 19.9 1.6 1 23 458 480 458 480 0.98 8 15 0.00014 0.011 16.8 6.0 1 23 486 508 486 508 0.99 9 15 0.095 7.7 7.8 3.8 1 23 639 661 639 661 0.96 10 15 4.5e-05 0.0036 18.3 2.0 2 23 668 690 667 690 0.92 11 15 3.9e-06 0.00031 21.6 1.1 1 23 696 718 696 718 0.98 12 15 2e-06 0.00016 22.6 4.8 1 23 724 746 724 746 0.98 13 15 2.6e-05 0.0021 19.0 3.1 1 23 752 774 752 774 0.98 14 15 0.00014 0.012 16.7 1.2 1 23 780 802 780 802 0.96 15 15 0.098 7.9 7.8 3.4 1 23 808 831 808 831 0.90
Sequence Information
- Coding Sequence
- ATGAGCGTCATCGAGCAGCAGGTGGAAGACGCTCACCAACGGTATGCTTCGCGTAAAGTATTGAAACTGAAGAAACGCGACCAAGTTATATCACCAGACGAGATTGCTAATGCCGATGACTTTTCAAAGGTGTGCAGGGTATGCGGTCATGTCGTGGACCAGACGGAGCCCATATTCGGCAAGACCGACGAGCCATACAACTTAGCGGAGACGATACGAAAATATCTATTCATTACGGTATGCGAAAATGACGAGCTGCCGAAGGGCGTGTGCGCGGTGTGCGCGAACAATCTGGCGTGCTGGCAGCGCCTGGCGCGGCTGGCGCGTCTCACCGACCTGGTGCTGCGCCGCCACGtgcgcgcccgcgccgcccccgccctcGCCCCGCGAGCCGCCCGCCCGGAACCGAAGCAGAGTGATATCGCCGAGGTTACTAATGAGGACGTAAAGTATCAGTCAACATTTTTGCTAAACTctgttgtaaaaaatatacttaccaATTACTTTCACACGCTGAATGTGGAGGAAAATTCGAACATAACATATGTCTGCCAAAAATGCAACGCTACAGTCGTGGGTAACAGTGCGGAGGATTTAACTGAACATCTCGCTTCGAACCATCCTACCGAAGTTGAAGTACAAAGTGAGAATGCAATAgacgattttattaaagacAACGTAACGTTCGAAGAGAGTCTACTGGTAGACGAGTTGGAAGATGTCGAAAGCGACGCCGGGGCCCACCGAGACGACGCCGCTCATAAAGCTTTAACGGAAATACCTCAATATCGCTGTCCATATTGCGAAAGCACGTTTTCGTCGACGTCGAGGCTGATATGCCACCTCGGCAAACACATAGAAGTGAGCGTCGAGAGCGGAGCGATGTGCTGTGACGGCATTTACGACAGGAAATCTTTGATGGCCCACCTTCAGCAACGACATGTGATACCGGTTTCAAACGGAGTCGTCTGCAGAACGTGCGGTTTCTGCGCCGAAGATGATGACGAGTTACAGATGCACGTGAACCGAGCGCACGTCGAGACGGTTGCGAATATGGAAGTGGACGTTAAAGAGAGGAACGGTCGAATTGCCAAATCTAAAAAATACATTCCTGCCACGTGTCCCCAGTGTAATAAAACCTTCtctaacaaatataacatgcTAGTTCATTTGAGGAGTCATAACGGGCAGCCGAACAGATATGAATGCGAGAAGTGTAACAAGAGCTACAGAAGTCGGGGAAGCCTCACCAGCCACCGGCGCGTGGTGCACGAGGGCGAGCTGCGGTGGGTGTGCACGGCGTGCGGGGAGGCGTTTCCGTCGCGGACGGCGCGCGACGTGCACGCCCGCCTGCACACGGGCTTGAAGCCTTACACGTGTGATTATTGCAGCAAGTCGTTCAGAGCGAAAAACACACTAAATCGCCACGTGGAAATGCACCTCGACGTCAGAAAATACACATGTCAACTGTGTTCAAAGAAATTTAGGAAGACCGCACACTTAAAGTATCATCTGAGAACGCACGATAGGATTCCAACAGACGAAGTGGATTTGCGCAATCGTACGGTACACGACGTCGAATCGTTCGGGAACCAGTTGCATTCGGATGATGAAGACGTTGCACATTCGGATATCGCTACCCATCACGCGACtgaagaatataataaattttacgttGCACTCGTGAAGTTTAGGAACCATTACGTTAACGAGCATAAGTCACAGCGGTACACTTACCCCGATTACACAGATTCAAATTGTTCCGACGGGGAGAGCGATACGCGGGACGCCGACGAGTTGGACATTAATCGTTACGACGATCTCACGCACTGCAACATGAGGAAAGACAGAATGGACGAGGAGACGAGGCTCGAGCTCGGCGAAGTCCGGACGAAAATCAACGGCAAGGTATACTTTACGTGTAAAGTATGTGGAAAAAATCTGAGCTCATCGCACACGTACTTGTTTCATAAACGAATCCATACCGGAGAGAGACCGTGCGTGTGTCACATCTGCGGAAAGCAGTTCCGCGCGCCCAGCGGCCTGCAGCGACACCTCACGGAGACGCACGAGCGCGTGCGCCGCTACACTTGCAGCATCTGCCCCAAAAACTTTATTAacttgcaaaatttaaaacaacacttCCGCATCCACACCGGCGAGCGACCCTTCGAATGCTCCCACTGCGGCAAACGGTTCACCCAGAGCGGCACCCTGCACGTCCATCTGAAGACCCACAGCGAACAGTTCCCTCACCGGTGCACAGAATGCGGCGCCAAATTCAGACAGAGGTCGGGGCTCTCGAGGCACCGACTGAAGCACACCGGCGAGCGGCCGCACGTGTGCGTCGACTGCGGCAAGGGCTTCCGGCAGAAGCACGAGCTGAGCGGCCACGCTCTGTCTCACACGGACGTCAAGCCGCACGTGTGCGCCGCGTGCGGAGCGGCCTTCCGACAGCGGAAAGCTTTGAGACATCACTGTAAACGGGCTCACGAGGGCAACGTGGCCGTCGACGTCGCCCACCACCTGACGTACAACCATGTTCCACCTTACTAA
- Protein Sequence
- MSVIEQQVEDAHQRYASRKVLKLKKRDQVISPDEIANADDFSKVCRVCGHVVDQTEPIFGKTDEPYNLAETIRKYLFITVCENDELPKGVCAVCANNLACWQRLARLARLTDLVLRRHVRARAAPALAPRAARPEPKQSDIAEVTNEDVKYQSTFLLNSVVKNILTNYFHTLNVEENSNITYVCQKCNATVVGNSAEDLTEHLASNHPTEVEVQSENAIDDFIKDNVTFEESLLVDELEDVESDAGAHRDDAAHKALTEIPQYRCPYCESTFSSTSRLICHLGKHIEVSVESGAMCCDGIYDRKSLMAHLQQRHVIPVSNGVVCRTCGFCAEDDDELQMHVNRAHVETVANMEVDVKERNGRIAKSKKYIPATCPQCNKTFSNKYNMLVHLRSHNGQPNRYECEKCNKSYRSRGSLTSHRRVVHEGELRWVCTACGEAFPSRTARDVHARLHTGLKPYTCDYCSKSFRAKNTLNRHVEMHLDVRKYTCQLCSKKFRKTAHLKYHLRTHDRIPTDEVDLRNRTVHDVESFGNQLHSDDEDVAHSDIATHHATEEYNKFYVALVKFRNHYVNEHKSQRYTYPDYTDSNCSDGESDTRDADELDINRYDDLTHCNMRKDRMDEETRLELGEVRTKINGKVYFTCKVCGKNLSSSHTYLFHKRIHTGERPCVCHICGKQFRAPSGLQRHLTETHERVRRYTCSICPKNFINLQNLKQHFRIHTGERPFECSHCGKRFTQSGTLHVHLKTHSEQFPHRCTECGAKFRQRSGLSRHRLKHTGERPHVCVDCGKGFRQKHELSGHALSHTDVKPHVCAACGAAFRQRKALRHHCKRAHEGNVAVDVAHHLTYNHVPPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -