Amic012965.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01011202.1:1103-4911[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.009 0.73 11.0 0.9 1 21 77 97 77 98 0.96 2 24 0.61 49 5.3 0.1 2 23 126 147 125 147 0.93 3 24 0.0047 0.38 11.9 1.0 2 23 170 191 169 191 0.97 4 24 0.017 1.4 10.2 0.1 1 23 195 217 195 217 0.95 5 24 0.036 2.9 9.2 0.7 1 14 222 235 222 245 0.78 6 24 0.016 1.3 10.2 0.4 1 23 251 274 251 274 0.95 7 24 0.0031 0.25 12.5 4.0 1 23 281 304 281 304 0.98 8 24 3.8e-05 0.003 18.5 2.6 1 23 311 333 311 333 0.97 9 24 3.3e-06 0.00026 21.9 1.6 1 23 339 361 339 361 0.98 10 24 2e-05 0.0016 19.4 0.4 2 23 365 387 364 387 0.96 11 24 0.00062 0.05 14.7 0.1 1 23 467 489 467 489 0.96 12 24 0.0079 0.64 11.2 0.1 2 23 516 538 515 538 0.95 13 24 2.2 1.8e+02 3.5 2.7 1 23 560 582 560 582 0.97 14 24 0.00024 0.019 16.0 1.7 1 23 586 608 586 608 0.97 15 24 0.044 3.6 8.9 0.2 1 23 613 636 613 636 0.95 16 24 0.23 19 6.6 0.6 1 23 642 665 642 665 0.91 17 24 0.0018 0.14 13.3 2.4 1 23 703 725 703 725 0.93 18 24 0.16 13 7.1 0.0 1 23 776 798 776 798 0.96 19 24 0.068 5.5 8.3 0.2 3 23 824 845 822 845 0.94 20 24 0.064 5.1 8.4 4.2 1 23 867 889 867 889 0.98 21 24 0.0049 0.39 11.9 7.8 1 21 893 913 893 915 0.95 22 24 0.00031 0.025 15.6 0.2 1 23 920 943 920 943 0.93 23 24 0.0015 0.12 13.5 2.4 1 23 949 972 949 972 0.96 24 24 0.14 11 7.3 0.3 1 23 978 1001 978 1001 0.97
Sequence Information
- Coding Sequence
- ATGTTAACTCGCGCACCTCCGCTCAGTAGTCCAGgAGGCCGCGAGAAAAACGAGCCCGAGAATGTGATAAAAACCGAGCCGGACTTTGTGTACGGACAGTCGCATAAGACAGAGAAGCGGCCCTACCAGAGGAGCGCAAGGGCCGAGGCTAGGTTTATCACGAAGAGAAACGCTAGCGCCATCTTAGAGTGCTGGGCGCTATGCCCGTTCCGTTGGAAACGCAACAGGTTCAAGTGCGCCTACTGCGAGGATAACTTCACCGACTGTTCCGACTTGCGGGACCACGTCAGACTTTGCTCCATGCAGCACAGCGTCAAAGACATCTACAGCAAGTTCAAGGAAATGACCCTGATCAATGTCGACGTCACGAATACCGTATGTAGGCTCTGTTCTCTCCCTTTCACTACTGTCAGCCAAATGGGCCAGCACGCGGCGGTGCACGGCTACGACTTCGACGCTTCGCACCCGGACGGGGTGCTCCCGTTCGCGCTCGACAAGGAGTCGTGGCGCTGCGTCATCTGCAAGGAGAAGTTCAACAACTTCCTCAAGCTGTACGAACACATGAACACACACTACCAGCACTACATTTGTGCGACGTGCGGCAAGGGTTATATGACCGCGCCGAGGCTCCGCAAACATTCCGAGGTGCACATCACCGGCTCGTTCCCGTGCGACAAATGCGGGAAGAGTTTCAACATGCGCGCCGCTAGGGATTACCACAAGGCGCACGCGCACGCCAAGGGTCCCCGCTACGAGTGTCCGCAGTGCAGCATGCGTTTCACCGGGTACTACGAGAGGATGAACCACTTGAACGAGGCGCACAGAGAAAAGGAGGTCCTGTACAGCTGCACGCACTGCGAGCACACGTTCAAGACGAGCGGGAAACGTGCGGTCCATGTCCGCACGGTACACTTCCCGCAGCAGCGCAGCTTCTCGTGCCACTACTGCAACTGGCAGTTTAAGGCCGCCTACGAACTGAAGAGGCACATGGTGAAACACACCGGCGAGAAGAATTTCTCCTGCACCCTCTGCGAGAAGACGTTCCCCAGGAGCAAAGCGTTGAGGAGCCATCTGAAGACGCACGGCGATCTCAACTGCAAGTGGTGCGGTTTGCCGTTCAAACAGAAGACGAGGCTGCTGGCTCATATGAGGACTGCTCATTCCGATTTGACGAgTACTACCGCTAGTGCAAAATCGGAAGTAGGAACGGTTAGGCGTGTTAGGAAGTTGAAGGAAATCGTGGGCGCGCGTCAAATGCGACGGCGCCGGAGAGCCAACGACGCTGGCTGGAATCCCGAGGAGTCCGAGAAGCGAATCGACAAAACGATGATGCGTAGAAACGCCATGACCATTCTGGAATGTTCCACCGCTTGGGCGTTCCGTTGGTACCACAACTCGTTTTACTGCTCATACTGTGACGCTAAATTCGTGGAAGCGTCCGCTTTGCGCGAGCACGTATTGCAACATCTAGCCGAATCGCCCACCAAGCGCGTCTTCTCGAAACTGCGAGAAAACAATATGATCAAGATAGATATTACAGATTTGAACTGTAGATTATGCGGTTATGCCTTCGAGGGCGTAAGTAGTTTAAAACTGCACCTGGCCACGGTTCACGGTAAAGTCTTCCACGAAGACTATAGCGACGGAGTGCTACCCTTTAAATTGGATTCCAACGGTTACAATTGTCAGATGTGCTCAACGCACTACGTTAGTTTCTTGAGAATAAACGAACACATGAACACACATTATCAGAATTACGTGTGCGACTCGTGCGGCAAGGCGTTCGTGTCCAAATCTCGGTTTAGGGAGCACGTGCATTCTCACGAAACGGGTAGGTTCCCGTGCGGGGACTGCGCGGAAGTTTTCGACACGCGAGGCACTCGGAAAACGCATAAACTGCGCGTTCACAGAAAGGGCATCCGGTACGCGTGTCCGCACTGTGCGGAGTTGTTCACGACTTATTACGCGCGGGCTAAGCATTTGGTGAACCAGCACGCGGCTCGCAATGTGAGAGTTGATTTCGAATGTCGTTGCGGCAAGTCGTTCGGGTCGAGCTGCGAATGCGCCGCGCGCGAACGTTTCACGCGTTTGCCGGTCCAGAGGAAGTACGAATGTCCGCATTGCGCGACCCACTTCGTCACCAAGGCGAAATTTAAGCGACACGTTGTTGCACATCAGGATTggCGCGCCGATGACCATACGCCGGGAGAGAGTgcgatacaaataaaatggaaaaggAAACGCAGGGTGATGGGCGAGAAGGCGAACGCTGCCTTCATTCTGGAACATTCGAACGCTGTCGCCTTTAGATGGATGCGCGGCAAATTCATGTGCGCGTACTGTCCGCAAATATACCCTAACGTCAGCGAGATCCGCCTCCATTCCGCCACCCATAACAAACTGGAGCTATTCGAAAAGCCCGAAGTGCGAAATTCTTTCCCATTAAAAGTAGACATTACGGATTTGTTCTGCGCCGTCTGCCAGCAGTCGGTCGAGAATTTGATAGAACTGAAGAAGCACTTGAAGGAGATGCATTTGAAGTGTTCAGACCAAGAATACAGCGACGGTATCGTCCCGTTCGTGCTGACCGGGAAGATATTCAGATGCGTGCACTGCGCGACTCATTTCGAGCGCTTCATGAGCCTGTTCATACACATGAACGAGCATTACCAGAGCTTCGTGTGCCACACGTGCGGCAAGAGCTACTCCGGGAAGCACAAGCTCCGATCGCACCAGAAGTGCCACGAGATCGGTCAATTTCCGTGTCCCAAGTGCGATATGGTGTTCAAGAATCGCGCGCTCAAGAATCGACATCTGGCGTTGGTCCACGGGCCTAAGAAACGATATCGTTGTCCCATATGCGACACGACCTTCGACTCCTGCCACTCTAGGCTGAAGCATCTGGCGGTCGTGCACGGGCAGAAATCGGAGTATCGCTGCAGCCTGTGCCCTTCGGTGTTCGGGAGCGGTACTTCGAGGTACTCCCACATGAGGATAGTTCATAAGAAGCAGAGCGCTGACAAATCGGCGAAGTCTCAATGA
- Protein Sequence
- MLTRAPPLSSPGGREKNEPENVIKTEPDFVYGQSHKTEKRPYQRSARAEARFITKRNASAILECWALCPFRWKRNRFKCAYCEDNFTDCSDLRDHVRLCSMQHSVKDIYSKFKEMTLINVDVTNTVCRLCSLPFTTVSQMGQHAAVHGYDFDASHPDGVLPFALDKESWRCVICKEKFNNFLKLYEHMNTHYQHYICATCGKGYMTAPRLRKHSEVHITGSFPCDKCGKSFNMRAARDYHKAHAHAKGPRYECPQCSMRFTGYYERMNHLNEAHREKEVLYSCTHCEHTFKTSGKRAVHVRTVHFPQQRSFSCHYCNWQFKAAYELKRHMVKHTGEKNFSCTLCEKTFPRSKALRSHLKTHGDLNCKWCGLPFKQKTRLLAHMRTAHSDLTSTTASAKSEVGTVRRVRKLKEIVGARQMRRRRRANDAGWNPEESEKRIDKTMMRRNAMTILECSTAWAFRWYHNSFYCSYCDAKFVEASALREHVLQHLAESPTKRVFSKLRENNMIKIDITDLNCRLCGYAFEGVSSLKLHLATVHGKVFHEDYSDGVLPFKLDSNGYNCQMCSTHYVSFLRINEHMNTHYQNYVCDSCGKAFVSKSRFREHVHSHETGRFPCGDCAEVFDTRGTRKTHKLRVHRKGIRYACPHCAELFTTYYARAKHLVNQHAARNVRVDFECRCGKSFGSSCECAARERFTRLPVQRKYECPHCATHFVTKAKFKRHVVAHQDWRADDHTPGESAIQIKWKRKRRVMGEKANAAFILEHSNAVAFRWMRGKFMCAYCPQIYPNVSEIRLHSATHNKLELFEKPEVRNSFPLKVDITDLFCAVCQQSVENLIELKKHLKEMHLKCSDQEYSDGIVPFVLTGKIFRCVHCATHFERFMSLFIHMNEHYQSFVCHTCGKSYSGKHKLRSHQKCHEIGQFPCPKCDMVFKNRALKNRHLALVHGPKKRYRCPICDTTFDSCHSRLKHLAVVHGQKSEYRCSLCPSVFGSGTSRYSHMRIVHKKQSADKSAKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -