Amic004267.2
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01002199.1:3218-11962[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.052 4.2 8.6 1.3 3 23 699 720 698 720 0.96 2 23 0.37 30 5.9 0.3 1 22 1100 1121 1100 1121 0.95 3 23 4 3.2e+02 2.7 0.4 1 22 1162 1183 1162 1185 0.82 4 23 0.0015 0.12 13.5 0.7 3 21 1196 1214 1194 1215 0.94 5 23 0.5 40 5.6 0.1 2 23 1223 1245 1222 1245 0.89 6 23 0.075 6 8.1 0.2 3 23 1266 1287 1264 1287 0.96 7 23 0.0016 0.13 13.4 2.2 1 23 1293 1316 1293 1316 0.95 8 23 0.23 18 6.6 0.0 1 23 1343 1366 1343 1366 0.90 9 23 0.021 1.7 9.9 3.4 1 23 1371 1393 1371 1393 0.97 10 23 0.007 0.56 11.4 0.2 1 23 1399 1422 1399 1422 0.95 11 23 0.0025 0.2 12.8 1.3 1 23 1435 1457 1435 1457 0.97 12 23 0.00019 0.016 16.3 1.8 1 23 1506 1529 1506 1529 0.97 13 23 0.00049 0.04 15.0 1.4 1 23 1594 1617 1594 1617 0.96 14 23 0.0039 0.31 12.2 2.1 2 23 1642 1664 1641 1664 0.95 15 23 0.0053 0.42 11.8 0.1 2 23 1670 1692 1669 1692 0.95 16 23 0.011 0.87 10.8 0.2 1 21 1736 1756 1736 1757 0.95 17 23 0.0013 0.11 13.6 0.6 1 23 1767 1789 1767 1789 0.93 18 23 9.6e-05 0.0077 17.2 0.3 2 23 1880 1902 1880 1902 0.93 19 23 2e-07 1.6e-05 25.7 1.1 3 23 1909 1929 1908 1929 0.98 20 23 0.054 4.4 8.6 0.4 1 23 1948 1971 1948 1971 0.92 21 23 0.066 5.3 8.3 0.0 1 23 1995 2017 1995 2017 0.98 22 23 0.03 2.4 9.4 0.6 1 23 2023 2046 2023 2046 0.95 23 23 7.9e-05 0.0063 17.5 0.3 1 23 2054 2077 2054 2077 0.96
Sequence Information
- Coding Sequence
- atgaatGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTAGCATCGAAAATAAGGGACTGCGTTTCTGTAGAGataagCGAAAATGACGACCTGCCTACCAATGTCTGCAGGAAATGCGTGGACAATGTCAATAACTGGCACATATTTAAGACTGTGTGTGAAAGGACACAAAACAAGCTACAGTCTCTGATTAATAAAGATGAAAGCCAACTAGAAGAGgttaaagtaaaaaatgagCCTTTGTCTGATGAGGCCTATGATGATGGAGTGGCCATTGATGGCTCATATGCTGATAGTGAGATTGGTGGTACATCCAGCAAAATGCAGCCTGAAGGCCCACCGATCTTGGCATCATTGGGGCTCACGCCGAGGAGTGATAAGACATATGTGGATCCCCGAATGGACTGGCATCGGGTACATGCAATATTGGGCATGGTTCAAGACGATGAAGTCATTGACGCACTGCAGTCAACAGAAGAGTGCGATGTTGTGCACGAATCTGACCATGACTCCGAATCAGATGTGGAGTTGAGTGATGATGTAAATGATTTTGTCGATTGTAAAAATGGCTACCCACTTAAGAGTGGACAGTTCATATCGAAATATCCGAAACTGACATCGTCCGATAATTATGCAAAAGTGAGAGAATTCTTGAAGTTGAGGAAGCGTAATACTAacgcatttaaatttaaacattgtcCTCATCCCAAAAATGCCTGGCAATTATTGTTCACTGCCGATTTACTAGAACTCATTGTCACTGCCACTAATGAACGGATTAGCGGTGCTCGGAGAGGATGCTCGGAAACAACTAATGTGGGTGAAATTAAAACGCTCATTGGCATACTATACATACATGGAATAATGAGGCCAACTCATCAGAATGTCAGTGACCTCTGGCACAACGATTGCGGCATAACATGTGTACAGAACTCTATGAAACTTGACAGATTCAGATTCCTGTTAAGGTATTTGAGTTTCGAACATGAGGATAACAACAGTATAATACAGTATGATGTAATGAAACGGACTCGTAAGGTGTTCGAAATATTCGCATTGAACTGTAGAGTGTCACATGAGATCAACAACATGGCAGTGATCGATGAAATTGTCGTTCCGGTGTACGGACCGTGTCCGTTCCGGTATAACATTGACAGTAAACCTTTAAAGAGCGGCGTCAAGTTAGTGCTGGTCGTGGACCCGTCAAGTTTCTATGTCAGTAACGTTGACGTTATAACCGATCCGTATTTTAGACCGGATGACATTGTTAGGAAATTAGTTCAACATTTGGCCGGCTCGGGAAGATCCATCTTGATGGACAGCTGGTATACTTCGGTGTCGTTAATGGATATGCTCAAAAGCGAATTCCAGTTGTACACCATTGCAGCGCTCAATCCAAAAGATGACATGGTTCCCGTGATGTTCGTGTCCAAGTACAGAAAAAGGCAACCATTCATTAGTGGGTTCTTGGACAACGATGTATCTTTGGCATCGTATGTGAATGCAAGATCTCAATGTGTGAACGTTTTGACTAACGAGCCTAGGTATTACAAGCGGAGCCACTGCAGTCACACGACAGTGGTTACAGTCTACAAGAAGAATCAGACTGCGGTTGAAGTTTTGGATGTTCTGATGCATTATTACACCACCATGCAGCATACAAATGATTGGACACTATCTATGTTTTTTACTCTTCTGAATATTGCATCGGTGAATGCTCAGGTTATATGGAGTTCGATCAACTCCGATAGGATAGTTCAACGGCGTCAGTTCATTAGGGAATTGGCATTGAGCCTTTTGGACAGTGAGGAGCCTCCGTCGCTTCTGACGGAGGTTGTGATGGAAACGGGTGCCGATAGCGACAAGGATGAAGATGAGGATGAAGACGACGAAGAGGGCAATGAATCACAGTCGTTCCCAATCATGAATGTTCCCAACATGCCCGAAGTCTCCATCACCGTCATGCGTCCCACCGGAGAAACGTTACATGCGCGTCAAGGTATCCAACAGCTCGCCTCCAAAGACTGCCTTGTCTGCGGTCGCTCTTATCAATACTCCCATAACGCAAGACGCCACGAACTCACCTCGCACAGCTTCGACCGCTACACGAACAAAACTACACACAAAAAGTCTCTATCGCACCTACAGCCAAAATTTAGGCCTAATCCATTCAATCCCAAAGCGCGACTCATGCCTAACCCCATTAGCCACAAGATGCAATTTATCCCAAAGGGCATTCCAGCAAAAATTATACCGACAAAAACTATCGCTCCACCGAAACCGATtcctattaaaacaataaaaccacCACAAAACAATCTGCCATACCCATTACGTATTAAAGCGTTGAAAGACttgcaaattaaaaagaaagaacCTCAAATCTTAAAAACTCTGCTGACATCTAAGCCAGAAGTTTTGATCTCCGAACCAGAAATATTGAATTCTGGTCCAGAAAGTCCTGAAACGTTGATATCAGAGCCGGAAATTGCTTCGTTTCAAGTGGAAGCCATACTGTCGGAACCAGATGGTTATGTAAATCAGCAAGATGACGATGAGGGTGAGGTAGAATCGCATcaatataaagttaataatcATGGTCAGAACTATGATACTGTTGATATGGACACggataatgaaattgaaatagctCGACAACAGGACAATGAATGTGATGATGAGCAGAAGGATAATGTAGGCGAAGATAAGGCCGAAAATAATCATGAAACTGCGGGAACCGATCAAAGTAATAATGAGAAGGAGCAAAATGAAGATGGTGAAACTCATTCTGAGAGTGGGTTTGAAAACtccatttcaaataaatgtgaCGACGAGACCAAAGAGGACAAGGAAGCTGATGGTCACGATCAACAAAATGAGAATTATGaagatgatgatgacgatCTGCCACCGGTAAGCTTGGCTCCAGTTGTAGAGATAAACGAGGACATGCAGACAAATTCATACAACAGTGAAATTAATGAAGAAGAGGAGGAAGACGATTTGGAATCGGCGGATGCCAATGACACCATAGACGGTGATGAAAACGTGAAAGAGTTAGATCCAGATAAGCTGtacgttacaaaaatacaacgaGACTTCATTGTCAAGTACCGTGACATAATTGAacagataaatacaaaaaagtgCCTCTGTTGTAACAAAGAGCATCCACGCAGGAAAGCTGTGATTCAGCATTTACAAAAGAATGGCCACAAGGTACCTAAGCATACTTGCTATAATTGCGTAGTGACATTCGGTCACATTGGAGCTTTGCTCAGTCACATGAGATCGAATACTTGCACCGATCTGTggaaaatcatttataatgaaaatggtATCACGGACGACCTCGTTTTAGAAGAGCCAAAAAATCCTAAAATTCtatacaaagatatttttaatgctaGATCATATTCATGTAAACTCTGTCCAGCTAAATTCCAGTTGAAgcaatttataatgaaacatgTGTTAGATGTTCACGAGGATGGCCAGTCAAGGGTACACTTGGCCTGTGTCCACTGTGGCTCGAGATTCAAAGATAAAAGTTTGTGGAAAAAACACATCCGGAATGGAGAGTGCACAGTTTACATTTCATGTGATCTATGCACGgaaaaatttgttaatatgCAAGATTTCAACGATCATGCCTTAGCTCTTCATGCTGGCAGCGTTAATCTATCAGACAGCCAGAGCAAATGTGTCGATGGTCGACCAACGGATTGCCCTCTATGTGGCAAGAAAAACAGTAGCTATCCTTATTTGGTCAAACATTTGAAGATTATTCACAACGAGGAAAAACCTCATTATTGCCAACATTGCGattctaaatttgaacaaGCCGCCGATCTTAATAAGCACATTTACATGGCTCATTCGGACGGATCTTTAGGCGTCCAGATTTCGACTGAGCCAGATATGTCGATTGTCAAAGAGGAAGCTGAGGAATATCATTATTCGTGTACGgaatgcaataatattttcgaaacGGTTGACGCATGGACAGATCACCAAGTGGCCGAACACAATCAAGTCGCACATCACTGCGACCAATGCGAGAAGAAATTCTTGCGACCATCTGAGCTGGCCGAACATAAGAATACGCATTTGCGTGTGAAATTTTATCCTTGCAACATCTGTTCAAACTCTTATAGCACCCCTCAAAAACTTTCCGAACACGTCCAACAGGCTCACCCCGGCGCGGGAGCGCATACCTCTATGGATGCTGAATTCTTCTGCGACATATGTATAAGATCATTTAAGAGTCGCCAGGCATACTCTAATCATATGCGTATTCATTCTAGAGTACCTACTACGAACAGAAAGCCCGGAGAACCTAAAGGCTTTTCCCCCCAAATTATTGGTAAGCCAATTCGACACTTCTCTATGGTTCAGCCGAGTTTTTTGTCGTTCAAGCCAAATTGTAATGTTCCTAATGCTCCTTACTCTTGTGATATATGTGGCAAAGGTTTTATgcataaaaagaatatatgGAAACATAAGAAAGTACTGCACGCCGACCTGATTAACGACAGAAATGATAGTGAAGAAAATACTATGCAAGCGTCCACTGAAGAAGATGACTACAACGTAGACGAAAACGGTGCAATTTTGTCGACTCCTCAATTTAacagtttcaattttacaaacataactaataatatacaGCATCAACAGCAGCCTCAACAAACACAAGATCCAGTGCCTTATACTTGTGAATTATGTAACAAACGATTTCCGCTCAGAACGAGTCTGTGGAAGCATAAACGTGCCAAGCATGGAATTATTAATGCTAGCTCCACGGGACCACCCGAGCAACAGGCGACGTCGAGTGAGTCATCCGGTCGATCGAGCTGTACCATTTGCAAGATCAATTTCTCCGACAAGAAGTCGTACTATCGTCATAgaaaaaatgtacacaaatCAACTGTTCAAATGTGCAAGATATGCGGGAAACCGCTGAGCTCCACGGTAGAGCTTTATGAGCATTTGAGAGCCGCTCACGCGCAGGAACTTTTGGGTTACAACGCTAGTCAAAGCACTAGCAAATCGAATGATATGGTGCAAGAAATGGAACCGGATTGCGATCAGGACCAGGACTCGATGGACCCCAATGCCGACTACCAAGCACGATATCCGTGCGATACTTGTGGAAAGCAATTTGTTGGACTGCTTGCGTTGCAAAATCATCAGTGCATCAACCAAATCCAAAATCAGCCGCAAACATTCGACTGCGAGATTTGCCACAAGAGCTACACCTCCATTGCTGCGCTTAAGAGCCACCGCGGTTGGCATTTACGTTCACCCGACGGGAAAGCCGCGGCGAACAACTCCGGCCTTTGGATGCCCCAGCACAAAGTTACAAGCAAAGTGAGCAAACACGAAGTCGTTGATCCTTCTCAACTGGCCAAGGTTCAGCATTCGACCCCCGCGAGTCTGGTTGCGAAGCGGAGATTACCACCCGAAGTTGAAGTGACAGTAGTCAATCCGAACAAAAAGTTGCGATCGGACGATTCGGTCGAAATGgatcaacaaaataattcatcCTCGGGACTCGAAGACAGATATTGTAACATTTGCGATAAGGAATTCACGAAGCGCGCTGCGTATCAGCGCCACATGGACGAGGTACACCAACCGAATTCCGTGTTCTGTCCGGTTTGCGACAAGAGTTTCACTAGGAAATCGACATTGATAGTTCACATGAAGAAGCACTACGAAGGGGGAGAAGGCAGTTCGACGGGGACCGGCCAGATGGACGACGACGGTCACGTGTGCGAGGTGTGCGACTCGCAGTTCGACACCATGGAAGAGTTGAACGCCCACCGCACGGAGCAACACGGCGAGGACGAGGAGTCGGCCGAGTCCGAGGACGAGGGGTTGGTCAACGTGCAGCAGCCGCCGGGCGAGTTCACGTGCAGCCAGTGCGGCGACGGGGTGGCCACGCCGCGCGACCTGATCGCCCACCGCACGATGCACGCGACGCCCACTAAGTTCTTCTGTAACATTTGCAAGGTCTACTTCGCTCGGGCGCTCGATCTCTCGTCGCACACGAGGGCGCGGCACTCCGACAACGACAAGGTTTGCTTCCCATGTGCCATGTGCGACCGCACCTATATGAACAAGAAGAGTTTGCAGCGGCACATCGAAATGGCGCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVEISENDDLPTNVCRKCVDNVNNWHIFKTVCERTQNKLQSLINKDESQLEEVKVKNEPLSDEAYDDGVAIDGSYADSEIGGTSSKMQPEGPPILASLGLTPRSDKTYVDPRMDWHRVHAILGMVQDDEVIDALQSTEECDVVHESDHDSESDVELSDDVNDFVDCKNGYPLKSGQFISKYPKLTSSDNYAKVREFLKLRKRNTNAFKFKHCPHPKNAWQLLFTADLLELIVTATNERISGARRGCSETTNVGEIKTLIGILYIHGIMRPTHQNVSDLWHNDCGITCVQNSMKLDRFRFLLRYLSFEHEDNNSIIQYDVMKRTRKVFEIFALNCRVSHEINNMAVIDEIVVPVYGPCPFRYNIDSKPLKSGVKLVLVVDPSSFYVSNVDVITDPYFRPDDIVRKLVQHLAGSGRSILMDSWYTSVSLMDMLKSEFQLYTIAALNPKDDMVPVMFVSKYRKRQPFISGFLDNDVSLASYVNARSQCVNVLTNEPRYYKRSHCSHTTVVTVYKKNQTAVEVLDVLMHYYTTMQHTNDWTLSMFFTLLNIASVNAQVIWSSINSDRIVQRRQFIRELALSLLDSEEPPSLLTEVVMETGADSDKDEDEDEDDEEGNESQSFPIMNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYQYSHNARRHELTSHSFDRYTNKTTHKKSLSHLQPKFRPNPFNPKARLMPNPISHKMQFIPKGIPAKIIPTKTIAPPKPIPIKTIKPPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLISEPEILNSGPESPETLISEPEIASFQVEAILSEPDGYVNQQDDDEGEVESHQYKVNNHGQNYDTVDMDTDNEIEIARQQDNECDDEQKDNVGEDKAENNHETAGTDQSNNEKEQNEDGETHSESGFENSISNKCDDETKEDKEADGHDQQNENYEDDDDDLPPVSLAPVVEINEDMQTNSYNSEINEEEEEDDLESADANDTIDGDENVKELDPDKLYVTKIQRDFIVKYRDIIEQINTKKCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEEPKNPKILYKDIFNARSYSCKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKSLWKKHIRNGECTVYISCDLCTEKFVNMQDFNDHALALHAGSVNLSDSQSKCVDGRPTDCPLCGKKNSSYPYLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMAHSDGSLGVQISTEPDMSIVKEEAEEYHYSCTECNNIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQAHPGAGAHTSMDAEFFCDICIRSFKSRQAYSNHMRIHSRVPTTNRKPGEPKGFSPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMQASTEEDDYNVDENGAILSTPQFNSFNFTNITNNIQHQQQPQQTQDPVPYTCELCNKRFPLRTSLWKHKRAKHGIINASSTGPPEQQATSSESSGRSSCTICKINFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQSTSKSNDMVQEMEPDCDQDQDSMDPNADYQARYPCDTCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLAKVQHSTPASLVAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNNSSSGLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTGTGQMDDDGHVCEVCDSQFDTMEELNAHRTEQHGEDEESAESEDEGLVNVQQPPGEFTCSQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNDKVCFPCAMCDRTYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -