Amic004500.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01002376.1:5672-13053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-12 6.1e-09 36.1 0.0 4 39 175 211 173 215 0.91 2 4 2.7e-12 4.7e-09 36.4 0.3 3 39 228 264 226 267 0.92 3 4 3.8e-15 6.6e-12 45.6 0.1 2 45 282 326 281 326 0.96 4 4 1.5e-18 2.6e-15 56.5 0.0 1 42 333 375 333 377 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGGAGCGAGGGGGAGTCGGTGAAGCGCGAGCCGCCGTCGGATGACGAGCAGCCGTACCGAGCGGTGTATGTAAGCGATCAGCCGATCTCGTCGGAACTTCTACCTATTAAATTGGAAAGGGACTGTTCGAACGATGAAAATGTGGCGACGAACATCTTACACCATTtacagCAATGCGGCGGAGGGCTGGAGGAGCCCCcggcgcccgccgcgcccgccgccacgccggtgcgcgcgcgcctgcccgcgccgccgccgcgcgcctccTCGCTGGAGACGCTGGAGCCCGCCACGCACGCCACGGCTCTGGGTTCAACTCTCATCACTAGCCACGCGACGTCGCTGACGACTAACGAAATACCGGACTCGTCGGATTTCATACCGCTGCTGGCCGTTAAGGACGAGCCTCTATCCGAGGGAGAACAACAACATCTGAGCGGCGACGACACGAGCGACTCGGGGGGCGCGTGCTGCGAGCCACCGGGCCGCGGGACTCCCAAGACGTGGTCTCAGCGGGACATGGATCGTGCTCTGGACGCCCTCAGAAATCATCACATGAGTCTAACGAAGGCGTCAGCTCGGTACGGCATCCCGTCCACGACGCTGTGGCAGCGGGCGCACCGACTCGGCATCGACACGCCCAAGAAGGAGGGCGCGGCCAAGTCCTGGCGCGACGCGGACTTGCGCGCCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCCCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCCCCGACGGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCGTCCGTgcagcgcgccgccgcgcagTACGGGATCCCCACCGGCACGCTGTACGGGCGGTGCAAGCGAGAGGGCATCGAGCTGTCCCGCTCCAATCCCACGCCGTGGTCGGAGGACGCGATGGGCGAGGCGCTGGAGGCCGTTCGggTCGGCCAGATGTCCATCAACCAGGCGGCCATCCATTACAACCTGCCGTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAATATCAGATACAGGGCTCGGCTTCTCATCTCCAGCAGGATGTGTCCAACGCAGACGCGGAGCCCCGAGGGCCGCTTCAAGAGTACTACGAGCCGCAGCAGCCGCCGCCTGCTCCGGAGGACGCGCCCCACCGTCCCTACTCCGAGCTGCCCTTCAGCCACATGTTCGACTGCGAGCAGGCCATGTACTACTCGCAGTATAGCATCACAACCAGTTGA
- Protein Sequence
- MPGSEGESVKREPPSDDEQPYRAVYVSDQPISSELLPIKLERDCSNDENVATNILHHLQQCGGGLEEPPAPAAPAATPVRARLPAPPPRASSLETLEPATHATALGSTLITSHATSLTTNEIPDSSDFIPLLAVKDEPLSEGEQQHLSGDDTSDSGGACCEPPGRGTPKTWSQRDMDRALDALRNHHMSLTKASARYGIPSTTLWQRAHRLGIDTPKKEGAAKSWRDADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGSASHLQQDVSNADAEPRGPLQEYYEPQQPPPAPEDAPHRPYSELPFSHMFDCEQAMYYSQYSITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -