Avir008460.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapostemon virescens
Gene Symbol
nfxl1
Assembly
GCA_028453745.1
Location
CM052089.1:20126109-20128904[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1 1.6e+04 -3.2 1.1 15 19 126 130 125 130 0.81
2 18 0.15 2.2e+03 -0.5 0.2 4 10 161 167 160 167 0.95
3 18 9e-08 0.0014 19.4 14.5 1 18 175 191 175 192 0.98
4 18 3.5e-08 0.00053 20.7 13.2 1 19 229 246 229 246 0.94
5 18 0.74 1.1e+04 -2.7 0.8 5 10 270 275 270 275 0.86
6 18 1.4e-05 0.21 12.3 11.3 1 18 281 299 281 300 0.92
7 18 1.2 1.9e+04 -3.4 2.2 5 12 325 332 325 332 0.85
8 18 6.5e-05 0.98 10.2 8.6 1 18 336 353 336 354 0.97
9 18 0.0021 31 5.4 7.0 1 12 388 399 388 399 0.94
10 18 1.9 2.8e+04 -4.0 1.3 6 10 409 413 409 413 0.96
11 18 1.2e-07 0.0019 18.9 14.0 1 18 419 436 419 437 0.91
12 18 0.0001 1.6 9.6 9.8 9 19 485 495 483 495 0.90
13 18 0.0025 38 5.2 6.2 1 12 505 515 505 515 0.95
14 18 0.85 1.3e+04 -2.9 5.8 14 18 547 551 547 552 0.89
15 18 2.3e-05 0.35 11.7 4.5 1 12 588 599 578 599 0.91
16 18 0.00028 4.2 8.2 15.1 3 19 628 644 627 644 0.92
17 18 2 3e+04 -6.5 3.4 9 13 650 654 650 654 0.71
18 18 0.00022 3.3 8.5 8.9 1 16 689 703 689 709 0.88

Sequence Information

Coding Sequence
ATGCAGAAGTTCAGACGTGCCCAAGCACAAAACAAGATAGCGATTAACAAGCATTTAGAGGCAAATGCTTATTTAGAGTCGTCCAGCGAAGACGAAGACGATATAAACACAGAGGACATACAAAATGTAGTAGGCAAAGTTTTGTCTGCCTATCAAGGTGGAGAGGTAGACACAGAAAAGACTTTATCTTTCTTAGTCAATCTATTTCAATCGGGCAGTGCAGTGTGTTTAATATGCATCTCATCTGTAAAGAAAGCAGACGCGATCTGGAACTGCAGCAAGTGTTTTGCTTTTTTACATTTATCCTGTATTCTGCATTGGATACGGGATAGCTTAAATGTAAAACATGAGAAAGGCATTGCTCCTATTTGGGCATGCCCAAAGTGTCGTATGGAATACGAGCAAAACGAAATTCCTCGTAACTATAAATGTTTCTGTAAGAAAGTTATAAACCCTGAGTTCCAACCATGGAGTATACCTCATTCATGCGGAGATGTGTGTGGCAAACCCTTGCAACCAGAATGTGGTCACAATTGTGTCCTACTTTGTCACCCCGGACCGTGTCCACCTTGCGCTAAAACAGTATCGATCAAATGTTTCTGTGGTAAACAAGTTCCTGAACAGAGACGGTGCAATGCCAAGAACTGGAGTTGCGGTACAGCGTGTAACAAAAAGTACAAATCATGCTCCCATAGCTGCACACAGCTATGCCATGCAGGAGATTGCCCTCCTTGCTCGGAGTCATTGTTACTCGAATGCCGTTGTAAAAGCAGTACAGAAAGAAGGCAGTGCTCAGAAGGAGCGTGGCGTTGCGATAAACCATGCCGTCGACCTTTGTCCTGCAATGTTCATGTTTGCCAAGATACGTGCCACTTACCCGGGGACTGTGGTCCATGCGCCTTGGAAAAGAATAGAACATGTCCCTGTGGTAAGAAGCGTTACGCGGTTTCTTGCAAGCATGAACAGTTGCCCACGTGCGGAGATACTTGCTGCAAGCTACTGGATTGCGGTTCGCATTATTGCAACATGAGATGTCACATGGACCAATGCGGACAATGCTTGGAAGTGGTAACAAAATCCTGTCGATGCGGCAGTTACCAGAAAGAAGTCGCCTGCGGCAAAGAATTCCACTGTAACAAGAAATGTATGCAGATGCGTCTGTGTGGCAGGCACATGTGCAACAGAAAATGTTGCGATTGCTTGATTAAGAATACGTTCAACGTATGCGAGAAAATTTGCGAGAACACATTGAATTGCCGCAAGCATAAATGCTCGAGCCCGTGCCACAGCGGTCCGTGCTATCCTTGTGAGCGTACGGACATTATCCAATGCAGATGCGGATATAACAAAATAACAGTACCGTGCGGTACAACGAAGAGAGTAAAGCCTCCGCCGTGCAACAAATCGTGCAAGGTACCGCCGACCTGCCATCACCCTAAAAGAGAAACGCATAAATGCCATCAGGGTCCGTGTCCACCCTGTAAAAAGATTTGCGATTTAGTGTACAAACGATGCGGCCATTCTTGCGTTGCCGTTTGCCACACGAAAGTCTGGGTGAAAGTGAACAAAAACGACGTGAAAGCGCATCCCGCGGGACCTTGGGAGATACAAAAGGAAACGAAGCAGCTGAAAACGTTGCCGTGTCCGCCGTGCGAGGTATCTGTACAGGTCACGTGTTTAGGCGGTCACGAAACACGGCCCTGGCCTTGTCACATAGCACGGCCCATGTCTTGCGGAAGGGTTTGCGGGAAAATGTTGCCCTGTACCAATCACACTTGTGAGCTAGTTTGCCACAAGGTATTAACCAACGAGGATACCAGAAATGCTACTCCGTGCAAGGATTGCGAGATACAGTGCGAGTTGCCGCGACCACAAGGTTGTACACATTCCTGTCCAAAATTGTGTCACCCGGCACCTTGTAACCCTTGCAAGCAACTTGTTAAAATTCCATGTCATTGCGGCATAGTCACTTTGTACAGAAGATGCGCCGAATTAACGTCAGCCACCGCAGAACAACACAACGACTTGCTAAAATGCGGAAATCAGTGCCCTAAAAACTATCCATGCGGCCACCGGTGTATGTACGATTGCCACCCTGGCATATGCAAGAACGAGAATGAATGTAACAAGAAGGTGAAGTTATTCTGTCCGTGTAAACGTATTAAGAAAGACTTCCTATGCTCGTTCGTGCAAAAGGAAGAAATTCGATTGCAATGCGATGATGTTTGCAACAAGTTGAAGATGGAGAAAAGCCAGGCGGAAGCAGCTTTACTGGAACAAAAACGGCAGGCTGAAGAAATACGTAATCAAAAAGAGATCGAGAAATTCGAGAGGAAGTTCAAACCCCGTCGCAAAGGAAGGGACAAGTTCGATAAGAAGCAATCGCTGAAAGAAACGAATAGTCACTATTGGAAATATTGGATTTTATCGATTTTATTGTGTATAGTAGGTGTAGCGATATATTACGTCAATGTTCAAGGAACGTGA
Protein Sequence
MQKFRRAQAQNKIAINKHLEANAYLESSSEDEDDINTEDIQNVVGKVLSAYQGGEVDTEKTLSFLVNLFQSGSAVCLICISSVKKADAIWNCSKCFAFLHLSCILHWIRDSLNVKHEKGIAPIWACPKCRMEYEQNEIPRNYKCFCKKVINPEFQPWSIPHSCGDVCGKPLQPECGHNCVLLCHPGPCPPCAKTVSIKCFCGKQVPEQRRCNAKNWSCGTACNKKYKSCSHSCTQLCHAGDCPPCSESLLLECRCKSSTERRQCSEGAWRCDKPCRRPLSCNVHVCQDTCHLPGDCGPCALEKNRTCPCGKKRYAVSCKHEQLPTCGDTCCKLLDCGSHYCNMRCHMDQCGQCLEVVTKSCRCGSYQKEVACGKEFHCNKKCMQMRLCGRHMCNRKCCDCLIKNTFNVCEKICENTLNCRKHKCSSPCHSGPCYPCERTDIIQCRCGYNKITVPCGTTKRVKPPPCNKSCKVPPTCHHPKRETHKCHQGPCPPCKKICDLVYKRCGHSCVAVCHTKVWVKVNKNDVKAHPAGPWEIQKETKQLKTLPCPPCEVSVQVTCLGGHETRPWPCHIARPMSCGRVCGKMLPCTNHTCELVCHKVLTNEDTRNATPCKDCEIQCELPRPQGCTHSCPKLCHPAPCNPCKQLVKIPCHCGIVTLYRRCAELTSATAEQHNDLLKCGNQCPKNYPCGHRCMYDCHPGICKNENECNKKVKLFCPCKRIKKDFLCSFVQKEEIRLQCDDVCNKLKMEKSQAEAALLEQKRQAEEIRNQKEIEKFERKFKPRRKGRDKFDKKQSLKETNSHYWKYWILSILLCIVGVAIYYVNVQGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00865697;
90% Identity
iTF_00183647;
80% Identity
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