Basic Information

Insect: Agapostemon virescens
Gene Symbol: zld
Assembly: GCA_028453745.1
Location: CM052083.1:12620986-12624234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0025 0.35 12.2 3.3 1 23 25 47 25 47 0.97

2 7 0.0013 0.18 13.1 0.0 2 23 222 244 221 244 0.97

3 7 0.0023 0.31 12.3 2.9 1 23 470 494 470 494 0.92

4 7 0.095 13 7.2 5.4 1 23 962 985 962 985 0.93

5 7 0.022 3 9.2 1.9 1 23 991 1013 991 1013 0.87

6 7 3.3e-06 0.00046 21.2 5.6 1 23 1019 1041 1019 1041 0.98

7 7 2.6e-06 0.00036 21.5 1.2 1 23 1047 1069 1047 1069 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0025	0.35	12.2	3.3	1	23	25	47	25	47	0.97
2	7	0.0013	0.18	13.1	0.0	2	23	222	244	221	244	0.97
3	7	0.0023	0.31	12.3	2.9	1	23	470	494	470	494	0.92
4	7	0.095	13	7.2	5.4	1	23	962	985	962	985	0.93
5	7	0.022	3	9.2	1.9	1	23	991	1013	991	1013	0.87
6	7	3.3e-06	0.00046	21.2	5.6	1	23	1019	1041	1019	1041	0.98
7	7	2.6e-06	0.00036	21.5	1.2	1	23	1047	1069	1047	1069	0.98

Sequence Information

Coding Sequence: ATGAGTGAGATGACGAGTGTGGAGCAGCAGCAACAGCAGCAACAGTGCGTGGGCGGCAGTTCGAATCCGGAGCATCATTGCAAGGACTGCGGCCTTTACTTCGAAAGCGATAAAAGTCTCGAAGTGCACCTGCGGTACCACCAGGAAAACCTGCTGAGTCAGTGGGCGAGTCAGGCACAGCAGGAGGAGAGTAACAACAACAATAGCAAGGCTGGCAATCACAACAGCCACGTGGGCGTCAAACGCGAAAGCGTGACCGCGCCGGCGGACTCGAGCGAGTCTTCCTCGAGGCCGCCCTCGCAAGACCCTTCGTCTTCGCAGCAGCAGCAGCAGCCGCAATCGTCGCAGCAGCAGCAGCAACAACAATCGCAACAACAACCGCAACAGTCGCAGCAGCAGCAGCAACAATCTGCTGGTCATAGTTACAATCATTTTCAGACGCCGATGTTCGGCGAGGCGAATTATTTTATGCAGAACGAACCGGCCTATATCTTACCCCATCATTACTCGCCGCCGCGAGACGAGACGCAGAACAATGGCGGTGGTGGTGGTGGTGTCGGCGCTGGAGGTTATTCGCGCTACCATCCGTATCAGCATCAGCAACATTTTGTTCCGGAACGCACCAGCTCGGTCAGTTCCACTAGTCCAAGAAGCCCACCCATTCAGTGTGATAAGTGCGGTGCTGTGTACGAGGATGCGAATCAACTTGGTGAACACGTAAGGACGAATCATTCGAATTCACCTAGTGGATATCCGGGACAGCATCAATACCAGCAGCTGGGCGGCAGTCCTCAGCAGCAGAATCAACAACAGCAACAGCAGCAGCAGCAGCAACAACAATCGTTGCACACGTCGCCGCCACAGCCTGGTCAACAGCAACAACAACAATCCGGCTATGATTATAACGGCGGGCAAGTTAAGACGGAAGTGAAGCAGGAGCCCGAGGAACAAGCCGAAATTCTCGACTTGGATTCTCATAAAGTTCAAACTCATAGGTACGAGGAGGAATTGATGAGGCTACATCAACAACAACAGCAGGAGCTGCAGATGCAGTTGCATCAGCAGCAGGTGTTGCAACAACAACATCAGCAACAGCAGAGGGCGGGACCGCATTCGGTGAGTTCTATGCTCGGTTGGCCACCGGCCGCCCAGCCTCATGATTATCATCCAGGGTTATCGCCAATGGGCCCGATGGACAGTGTCTCACCGTTGCCTGATCAAGGTCAATTTATGCGCGGGCAGCATATGCCTGTAGAACCTCCGCGTCATCCAGGTTCGCCTATCATTACGAGCACGCAGCCGATGCCTGGACATCAGATGCCCGGAGGTCTTCTGCAACAACCACCTAAACCTCCGCCGTTGGCGAATCAATCGTGGAAAAGTAATGAGGCGCGGCGACCAAAGACCTACAACTGCACCGCGTGCAACAAGTGGTTCACCAGCTCGGGCCATCTGAAAAGGCACTACAATACCACGCTGCACAAGAACGCGGTTAAACAGAGCAATCAGCCCGATCCTGCGAACATGCCTATCAGCGCTCATCACCATCCTGGTAGAGATAATCATTCGGGGAGTGGTAGAACCGGGGGGCCACCAAGATCACCAGAATTATCTGCTTCCGGGAGTCCCCCAAACTTGATGGCAGGTCCCTCGGGAGAGGCAGCGAGGGGCCTGCTTCACACGCCCACCACCACCACCAGTCTCTACAGCAACAATTCCAACAACAGCAACAGCAGCAGCAGCAGCGAATCTTCGGCGGCGGCCCTAACGCAACAACAGCAACAACCGTCTTCGGCGGTCCACTTGGGCTCCACAATGGTACCGCCGCTCAATTCGCCGGCTCAATCACCAATGGCGGGCCACCATCAGCAACAAATGAGTTCCCCATCCTCTCAGCTGGGCCACCAACAGCAGCAACAACAGCAGCAGCAGCAGCAACTTCATCACCTGCCAATGGGTTCGCCGTCGGGCCAGCTTCCGGTCCACCATCCCATGAGTTCGCCCATGTCACCCATGCACCCGCCGCCGGCGCCCCACCTGAGTTCGCCTTCGCCAATGGGCTCGTCCCACCCGCACCACATGAGTTCGCCGTCTCCCATAACGCCGGGCTCGGTCCACCCAGCAATGGCTTCGCCCACGGCGATGGGGGGTACTACGATGCCTCATCAGCCGTACCCAAACGCCTTGCCCCCCCACGTTACAACTACTACCAACATCCCGGGCCTGCTGGAGTCTATCACCATCCAGCTAACTACTACTGGTAATGAGATGCCGTTAACACTGAACGGTCAATCTCAACACCAACAAGCACACCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGTCTCAGGATGTTTTACCTGGTTTCGGGACCTTCAGTAACCACCAAAGGCCCTTACCGAGTTTCACTCAGTTCAACGTAACCGGGTTTTTAGTTGGCCAGAATCAACCTCAGGCCGTTAACGTGGGGGGGCTAAGTCCGGAGGAGAACGCGTCTCCTCAAGATAGATCATTCGATTCGTCTGGATCGAACTACGATCCGTATAGAAGTTCGCCGCCGCGGTACGAATCTCTGACCAACATGGACATGGAGATGCATCCGAACACCGACGGCATGATCATCAAACACTACGAGATCCAGACGCATCATATGTCTCATCATCCGCTCCATCATCATCTGTCTCGGGATCATCTCGAGGCGAACAACAATCTACCGCAGCTGATCCAAGCGAAGGAGGAGCTGAATCCGAACGTCGGTAGACAATTCGAGAAGCAGCATTACAAATCGAAAGGCATCACCGTGGTCACGAAGGAGCATCAGGTGACCAGCACGAACACCGGTTCGCACTATATTTCCCAGGACGGTTTTCacaagtgcatcgagtgcgacaaggtattcaacaaggcttgctacctgacgcaacacaataagagcttccactccggcgacaagccgttcaaatgcaatcagtgcggcaagaggttccccctcgagtacctgcacgcggagcacttgcagaagcacgccggtgacaagccgtacaagtgcgagatatgcccgaagcagttcaaccacaaaactgacctcaggcggcacatgtgcctccacactggcgaaaagccgtacgcctgtgataattgcggcaagggattcatcaggaaggaccacatgatgaagcacctcgagacgcacaaAAAGAAATCCAACAACCACAACGTCCATCTGCGGGCGTGA
Protein Sequence: MSEMTSVEQQQQQQQCVGGSSNPEHHCKDCGLYFESDKSLEVHLRYHQENLLSQWASQAQQEESNNNNSKAGNHNSHVGVKRESVTAPADSSESSSRPPSQDPSSSQQQQQPQSSQQQQQQQSQQQPQQSQQQQQQSAGHSYNHFQTPMFGEANYFMQNEPAYILPHHYSPPRDETQNNGGGGGGVGAGGYSRYHPYQHQQHFVPERTSSVSSTSPRSPPIQCDKCGAVYEDANQLGEHVRTNHSNSPSGYPGQHQYQQLGGSPQQQNQQQQQQQQQQQQSLHTSPPQPGQQQQQQSGYDYNGGQVKTEVKQEPEEQAEILDLDSHKVQTHRYEEELMRLHQQQQQELQMQLHQQQVLQQQHQQQQRAGPHSVSSMLGWPPAAQPHDYHPGLSPMGPMDSVSPLPDQGQFMRGQHMPVEPPRHPGSPIITSTQPMPGHQMPGGLLQQPPKPPPLANQSWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKNAVKQSNQPDPANMPISAHHHPGRDNHSGSGRTGGPPRSPELSASGSPPNLMAGPSGEAARGLLHTPTTTTSLYSNNSNNSNSSSSSESSAAALTQQQQQPSSAVHLGSTMVPPLNSPAQSPMAGHHQQQMSSPSSQLGHQQQQQQQQQQQLHHLPMGSPSGQLPVHHPMSSPMSPMHPPPAPHLSSPSPMGSSHPHHMSSPSPITPGSVHPAMASPTAMGGTTMPHQPYPNALPPHVTTTTNIPGLLESITIQLTTTGNEMPLTLNGQSQHQQAHQQQQQQQQQQQQQQQSQDVLPGFGTFSNHQRPLPSFTQFNVTGFLVGQNQPQAVNVGGLSPEENASPQDRSFDSSGSNYDPYRSSPPRYESLTNMDMEMHPNTDGMIIKHYEIQTHHMSHHPLHHHLSRDHLEANNNLPQLIQAKEELNPNVGRQFEKQHYKSKGITVVTKEHQVTSTNTGSHYISQDGFHKCIECDKVFNKACYLTQHNKSFHSGDKPFKCNQCGKRFPLEYLHAEHLQKHAGDKPYKCEICPKQFNHKTDLRRHMCLHTGEKPYACDNCGKGFIRKDHMMKHLETHKKKSNNHNVHLRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00963437;
90% Identity: iTF_00762799;
80% Identity: -