Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052094.1:1038393-1043294[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.022 3.1 9.2 1.0 2 21 140 159 139 162 0.89

2 22 0.1 14 7.1 0.2 2 20 168 186 168 188 0.92

3 22 0.57 79 4.7 4.8 1 23 204 227 204 227 0.93

4 22 3.3e-05 0.0046 18.1 2.4 1 23 606 629 606 629 0.93

5 22 0.0044 0.61 11.4 0.7 2 23 662 683 661 683 0.94

6 22 2.2 3.1e+02 2.9 2.7 1 22 822 843 822 843 0.95

7 22 0.0019 0.26 12.5 2.6 1 23 850 873 850 873 0.92

8 22 1 1.4e+02 3.9 3.4 1 22 883 904 883 906 0.89

9 22 1.4 1.9e+02 3.5 0.1 2 19 929 946 928 949 0.89

10 22 0.36 50 5.3 4.0 1 23 956 979 956 979 0.90

11 22 8.3e-05 0.012 16.8 0.9 1 23 990 1013 990 1013 0.94

12 22 0.061 8.4 7.8 0.2 1 20 1046 1065 1046 1067 0.94

13 22 0.19 26 6.2 1.6 1 23 1074 1097 1074 1097 0.94

14 22 7.7 1.1e+03 1.2 3.3 1 19 1106 1124 1106 1129 0.88

15 22 0.00013 0.018 16.2 0.1 1 21 1160 1180 1160 1181 0.95

16 22 0.0038 0.53 11.6 0.8 1 23 1188 1210 1188 1210 0.97

17 22 0.0016 0.22 12.7 2.0 1 23 1220 1243 1220 1243 0.95

18 22 0.053 7.3 8.0 0.1 2 20 1285 1303 1284 1305 0.93

19 22 0.0067 0.94 10.8 5.6 1 23 1312 1334 1312 1334 0.98

20 22 0.67 94 4.5 0.1 1 23 1343 1366 1343 1366 0.87

21 22 1.8 2.5e+02 3.1 0.2 1 23 1446 1469 1446 1469 0.95

22 22 0.00021 0.03 15.5 0.1 2 23 1490 1512 1489 1512 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.022	3.1	9.2	1.0	2	21	140	159	139	162	0.89
2	22	0.1	14	7.1	0.2	2	20	168	186	168	188	0.92
3	22	0.57	79	4.7	4.8	1	23	204	227	204	227	0.93
4	22	3.3e-05	0.0046	18.1	2.4	1	23	606	629	606	629	0.93
5	22	0.0044	0.61	11.4	0.7	2	23	662	683	661	683	0.94
6	22	2.2	3.1e+02	2.9	2.7	1	22	822	843	822	843	0.95
7	22	0.0019	0.26	12.5	2.6	1	23	850	873	850	873	0.92
8	22	1	1.4e+02	3.9	3.4	1	22	883	904	883	906	0.89
9	22	1.4	1.9e+02	3.5	0.1	2	19	929	946	928	949	0.89
10	22	0.36	50	5.3	4.0	1	23	956	979	956	979	0.90
11	22	8.3e-05	0.012	16.8	0.9	1	23	990	1013	990	1013	0.94
12	22	0.061	8.4	7.8	0.2	1	20	1046	1065	1046	1067	0.94
13	22	0.19	26	6.2	1.6	1	23	1074	1097	1074	1097	0.94
14	22	7.7	1.1e+03	1.2	3.3	1	19	1106	1124	1106	1129	0.88
15	22	0.00013	0.018	16.2	0.1	1	21	1160	1180	1160	1181	0.95
16	22	0.0038	0.53	11.6	0.8	1	23	1188	1210	1188	1210	0.97
17	22	0.0016	0.22	12.7	2.0	1	23	1220	1243	1220	1243	0.95
18	22	0.053	7.3	8.0	0.1	2	20	1285	1303	1284	1305	0.93
19	22	0.0067	0.94	10.8	5.6	1	23	1312	1334	1312	1334	0.98
20	22	0.67	94	4.5	0.1	1	23	1343	1366	1343	1366	0.87
21	22	1.8	2.5e+02	3.1	0.2	1	23	1446	1469	1446	1469	0.95
22	22	0.00021	0.03	15.5	0.1	2	23	1490	1512	1489	1512	0.95

Sequence Information

Coding Sequence: ATGATTCGAGAAAAATTGGATGTGAATGATGTTCAAAAAGGTTTGCACGTTTGTTTTCAGCCTGACTCTGAGACACGGATCAAAGACGAGCCACTCAACACGGATGACAGTACTTTGCCATTAACAGATGCTAATGTTAACACTGCCATACCGACTGGAGCGATTGTTCAAGGAACACAATTGGTGGACGACGTGAATAACAAAGAGAACAAGCTCGTATCGCCTAAGAACGATGTCCATATCCAGAAATCGGACAAGGACGTGGTCAACACGAGGAAGCGTAAACGCTTGAGATTTGAAAATTTGAAGAAGCCGATGGCCACGGAGTGCGAGCCAGTCTTGCCACTACGTAAACGACCCTGTCGCGGTATTGTTAAACGTGCTTTGCCGAAACCAGCGCCCTTAACATCGTTTCAGGAATGCGACGTGTGTTTTTTAACGTTTCGAACAGAAAAAGCACTGAAGAGTCACAAAGACTTTTACCACTCGATAGTCAACCGTACCTGCGATCGGTGCCTAAAATCATTCCGATCGCCTGCCGTGTTAGCTACTCATAAATTGTCGCGTAAATGCATTGGAAGACCTCGTATGTCATTGAGGAAGAATAGATATTGCTGCTCTTTCTGTGATCGGAAGTTCTGGAACAAACCGTACTTACAGGGTCACATGTACCATATCCACAACGAGTTGTTGCAGAAACAGAACGGTGACGCTGGCAAGGCCAGTGAAACTGACAGGTCCGACGAAACCGATAAAATTAAACAAACGACGCAGATTAAAAAATCCCTCAGATTCGTTAGGAGGTATAGATTAAGAACCGACAAAACTATGGAGAACCCTAAAAATAATGAAACCGAGAAAACTAAGGAGAGCCCTAAAATTAAAGAGACCACCGACAAAACTAAGGAGAGCCCTAAAATTCAAGAAATCGATAAAACTAAAGAGACACCTAAAACCAAAGAGAACCCTAAAATTAAGGAAATCCATAAAATCATGGATCCAGAACAAACCAATAAACTGCCACCGACAGAGAGCACCGACAGTAATGTAGAAAATCCTTCTGTACAAGAGAAAGTAAATGATTCATCTGATAGTCCCTACAAAAGAATGAGGCAAACGACTATCACAGAGTTCCTCTTGGGATTCGCGAAATCACCTAATCCCGAGTCCCCGAAGAAACCGGATGACAAACAAAATGAAAAAATAACAGAGACTCCGAACAAGATGCCCAGGCAAAATGGAGTGTTAACAGACAAATATGTTACCTTGGCGACAACGCCAGGAAGGGTTAAACAGAACGGGGTAATCGCGGAAGCGGTTTCCACCCCTCGTGCTGGGAAAACGCCTGGCAAGGACGAAAGCCGAAAACTTGATGGAACGAAGAAACCGTTGGTCCAGATACACATGAATCCCGACGACATGTTAACTTTGTGGAAAGAGAAGATTAAAAACGAGGAACACGAGGAACACAAGGAATGTAGCAATACTCCTTCGCAGAATGGCTCGTATAATCTTAGACGAGTGATAAGAAAAATTGTGGTGAAACCTTCTACACCGCGTGATAACAACGGGAAGTGGATTAGCGTGCATAAAAAGACAGCAGAAGATCCGCCGAAGGAGAGGCGTCAGAGTAAGAAGAACAAGTTCAAATGTAAAGACTGCAAAGTGAATTTAGTGAGATGCGACAAGGTGTTCAAAGCAGAGACTGATCGCGTGCCTTCGCTGGACATAGAGAGAGAAATGGAAGAAGTTTGGAGAAAGAAGACAGCTGCTTTGAAGAAGGTCAACGTGACGAAGACAAACCTGCGCAGGATATTCCGTTGTAAAATCTGCAGGAAGTTCTTCTCGACGAAGACTAATTTATTCGATCATCTGGAAGCGACTCACGTCTACTACATATCGAGTGTGTGCAGGGCTTGGTACAAGTCTCGAATCAGATTGTTGAAGCACTATTTGTTAGAGCACAATTCTCTGAAGCGGATGGAGTGTTGCGTATGCTTCGAGAAGTTCTCGTCGCCGGTGATGTTGAAGCGGCACGTTGGTATCCACTGCATCAAGGTGTTGCAGTCGAGATGCGACCAGCTTCTCTACAGAGACTCGGTCAGCTGCAAGGCGAACCCTAAGATGAACTCCTGCGAAGCGTGCGGCAAGGAATTCTGGTTGGGTGCTTGCCTGAGCGAGCACCAACAGGAGTGCAAAGAGCTGTTGACGATAGTGGCGAGGTCGCGGAGGGCGCAGTTGTCGGCGAAAATGTTCTCAAAGAAGACGCCCGAGCAACCGTTGGAGGTTGCTGCTGTTGCTAGCGTTGGCGAGGAGGAGCAACAGCAGTCCAAGGACTCCTCCGTCAATGACGATTTTCGTAACGTCAGCTCACCGTCTTGCGGAGAGCCGAGGAGGTTGCTAAAAGGCGTCGCCTTCGCGAAGGGTTACAGCATCAACGATTCCGGCGCCAACAAAGAGAAGTTCTCCTGCAGCAGTTGCGGCGCGCAGTTCCTCACCTTTCATAATTTATGCCTGCACGAAAGAACCTACGGGCAAGAGGCCACGCACGTCTGCCAGAGCTGCAACACCGCGTTCACCACGCAGAAGTTGTTGCAGCACCACGTGTTGGCCACCCACCTGCTCGACACTCTACAGAACTACAAATACTTCTGCACTTTCTGCACGCAGGGCTTCCAGAAGAAGATCAGTCTTCAGATCCACACGGGACACTTCCACGCTGGTCAGACACCCATCATTCCGAAACCGTGGCTGGACAGCTCCTCAGACTGGCAGGTGAACACCGTGTGCAACGTGTGCAATTTGATATTCGAGTCGAGCGAGCGTTTCGTCGAGCACAACATGTACTACTACAAGGGCCAGGTGTTCACCTGCACGTTCTGCAACCAAACCTTCCAGGGCATGTACATGCTGAACCATCATAACAAGTTCGTGCACTACACGGAGGACATCACGAGACTCTACAGCTACAGGTGCAACGTCTGCGACGAGGGCTTCACCCAGGAGTCCCAGCTGTACGCGCATAAGTTGCATGTCCATTCGGCATTGTCCGAAGACAACTCGCAATCCTTAGAGGATCACACCTACGCCATTGAGTCCAGGAACGGGGCATCGACGAACGAGCCGATCAACAGATACAATTGCGAGGTTTGCTTCACGGATTTCAAGGTCGAGGAGGAGCTACGACAGCACAAGATGGAGTACTCGAACGACGGCGAGTATCTCTGCTCCTATTGCGCCAGACGATGCTCCACGGACGCCCTGCTCAGCCAGCACGAGCGTTTATCGCACACCTGTCGCAACTTGAACGACTGCTACAAGTGTCGTTTCTGCGAGGAGGTGCTGTCCACCTCTACAGCCTTGAAATGCCACGAGGTACACTTCCACAAGATCAAACCCGAGAACCCGGACGACAGCAACGGTCATCAGCTGAACGCGAACCAGGTTGGGAAATCAAGCGAGAACGTCGGGGACCATTTCACCTGTACCATTTGTGGCGTGATATTCACGAGATTGGAGAAATTGAATCAGCACATTCTGGAATACTCGAACGTGGGTCTGTACAATTGTCAGATCTGCAACCGCAGGTTCCCGGAGTTGTATCGGCTGGAGGTCCACAAGCTGAAACATTCGAACTTGAATTTTATCTTGTCCAGCCATCACTGTCCCATCTGTCGCGAGGGATTCGCGACTCCTGTCAACGTTCGGATTCACATGATGCATTTCCACAGAGACGCTGCAACCGATTATCGTGTACCGGAGGACGCGCAGACCTCGCAAGCTTCAACCTTGGTGAACCGCCAAGTCGAGAATCTCCAGACGATCTCCAGCGACCCATCGAAAGAGTTACTAAAGTGTCAAGAATGTTTGGTGTCGTACGATTCCTCGCGTGGTTTGAGAAGGCACCTGGCCCGGTTCACGAACAAGGGGCAGTACGCCTGCGAGCACTGCAGCCGGAAGTTCCACCAGATGCAGCTGCTGAAGGACCACCTGCGGAAACATGTGTCCGGCTTTCAGCGGCTGAAGTACCCTTGTCCGGAATGCGACGACCGATTTGGAAATCCTGTGGCTAGGTACCAGCACATCGTCCATCTGCATGGGAAGAGCAAGTGGAAAGGCGACGTGCCTGTTGGCATAAGGGTGCAGAGCAAGACCGGAGCTGCCGTCGAGAGGTTGGAGGGTGAAGAGTCCGACGCATCGTCGCTTAGAACGGACACCCCAACGGACAATCTGGCCTCCGTCGACGAACCCGTTGCCCCAGCTTGCCTCGAGAACGGACTGGACGATCGTGAGGGAAAATCAGGGGAAATCGCGATCGCGAAACCTGTTGTATACTACATTTGCCCCCTTTGCAGCTTCAAGACCGAGATGATGATGACGTTCATGGCGCACTTGAAAGTGGAGCACCGGAAGATGATCCAGGGCACTTTGTCCTTCCCGTTAAACACCTCGGTGAAGTGCATCATCAGCTGTTCGACTTGCGGGATCACCTTCGTCTCGGAAAACGATCTCAAGGTACACCTGAAGAACGTGCACGTGAGGATCTGCTCTGACAATGGGGATGACGCTTCCGTTTCCGCGGAGAACGACGCGGATGCTGTGCAAATCGTTAGCGAGATGAAGGAGGGTGCTGCCAAACCGTCTGGGGACCAGGCCGAGTCGAATGTTCATACGCTGTCCTGCAGTTATTTCTTCCCGAGCATTAACTGTGTCAAAACTATCGCGTTACCGGAATCGACTGTCCCGAGCGCCAATGACACCAAGTTAAGTTAA
Protein Sequence: MIREKLDVNDVQKGLHVCFQPDSETRIKDEPLNTDDSTLPLTDANVNTAIPTGAIVQGTQLVDDVNNKENKLVSPKNDVHIQKSDKDVVNTRKRKRLRFENLKKPMATECEPVLPLRKRPCRGIVKRALPKPAPLTSFQECDVCFLTFRTEKALKSHKDFYHSIVNRTCDRCLKSFRSPAVLATHKLSRKCIGRPRMSLRKNRYCCSFCDRKFWNKPYLQGHMYHIHNELLQKQNGDAGKASETDRSDETDKIKQTTQIKKSLRFVRRYRLRTDKTMENPKNNETEKTKESPKIKETTDKTKESPKIQEIDKTKETPKTKENPKIKEIHKIMDPEQTNKLPPTESTDSNVENPSVQEKVNDSSDSPYKRMRQTTITEFLLGFAKSPNPESPKKPDDKQNEKITETPNKMPRQNGVLTDKYVTLATTPGRVKQNGVIAEAVSTPRAGKTPGKDESRKLDGTKKPLVQIHMNPDDMLTLWKEKIKNEEHEEHKECSNTPSQNGSYNLRRVIRKIVVKPSTPRDNNGKWISVHKKTAEDPPKERRQSKKNKFKCKDCKVNLVRCDKVFKAETDRVPSLDIEREMEEVWRKKTAALKKVNVTKTNLRRIFRCKICRKFFSTKTNLFDHLEATHVYYISSVCRAWYKSRIRLLKHYLLEHNSLKRMECCVCFEKFSSPVMLKRHVGIHCIKVLQSRCDQLLYRDSVSCKANPKMNSCEACGKEFWLGACLSEHQQECKELLTIVARSRRAQLSAKMFSKKTPEQPLEVAAVASVGEEEQQQSKDSSVNDDFRNVSSPSCGEPRRLLKGVAFAKGYSINDSGANKEKFSCSSCGAQFLTFHNLCLHERTYGQEATHVCQSCNTAFTTQKLLQHHVLATHLLDTLQNYKYFCTFCTQGFQKKISLQIHTGHFHAGQTPIIPKPWLDSSSDWQVNTVCNVCNLIFESSERFVEHNMYYYKGQVFTCTFCNQTFQGMYMLNHHNKFVHYTEDITRLYSYRCNVCDEGFTQESQLYAHKLHVHSALSEDNSQSLEDHTYAIESRNGASTNEPINRYNCEVCFTDFKVEEELRQHKMEYSNDGEYLCSYCARRCSTDALLSQHERLSHTCRNLNDCYKCRFCEEVLSTSTALKCHEVHFHKIKPENPDDSNGHQLNANQVGKSSENVGDHFTCTICGVIFTRLEKLNQHILEYSNVGLYNCQICNRRFPELYRLEVHKLKHSNLNFILSSHHCPICREGFATPVNVRIHMMHFHRDAATDYRVPEDAQTSQASTLVNRQVENLQTISSDPSKELLKCQECLVSYDSSRGLRRHLARFTNKGQYACEHCSRKFHQMQLLKDHLRKHVSGFQRLKYPCPECDDRFGNPVARYQHIVHLHGKSKWKGDVPVGIRVQSKTGAAVERLEGEESDASSLRTDTPTDNLASVDEPVAPACLENGLDDREGKSGEIAIAKPVVYYICPLCSFKTEMMMTFMAHLKVEHRKMIQGTLSFPLNTSVKCIISCSTCGITFVSENDLKVHLKNVHVRICSDNGDDASVSAENDADAVQIVSEMKEGAAKPSGDQAESNVHTLSCSYFFPSINCVKTIALPESTVPSANDTKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -