Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052084.1:4297515-4299790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.34 48 5.4 5.1 1 15 216 230 216 234 0.84

2 8 3.5e-05 0.0048 18.0 5.9 1 23 244 266 244 266 0.99

3 8 1e-06 0.00014 22.8 1.5 1 23 272 294 272 294 0.98

4 8 1.4e-06 0.00019 22.4 0.6 1 23 300 322 300 322 0.98

5 8 0.00012 0.017 16.3 0.8 1 23 328 350 328 350 0.98

6 8 3.6e-07 5.1e-05 24.2 3.3 1 23 356 378 356 378 0.97

7 8 0.0002 0.028 15.6 2.2 1 23 384 406 384 406 0.97

8 8 9e-06 0.0013 19.8 9.1 1 23 412 434 412 435 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.34	48	5.4	5.1	1	15	216	230	216	234	0.84
2	8	3.5e-05	0.0048	18.0	5.9	1	23	244	266	244	266	0.99
3	8	1e-06	0.00014	22.8	1.5	1	23	272	294	272	294	0.98
4	8	1.4e-06	0.00019	22.4	0.6	1	23	300	322	300	322	0.98
5	8	0.00012	0.017	16.3	0.8	1	23	328	350	328	350	0.98
6	8	3.6e-07	5.1e-05	24.2	3.3	1	23	356	378	356	378	0.97
7	8	0.0002	0.028	15.6	2.2	1	23	384	406	384	406	0.97
8	8	9e-06	0.0013	19.8	9.1	1	23	412	434	412	435	0.96

Sequence Information

Coding Sequence: ATGAACGAAGAGTGTCCAAGTTGTAAACAAATAACAAATACAACATGCTCGAGGCTTATAAAAGATAGTTGTGGTCATAGTAAATGTCGCATGTGTTTAATATATGAAGAACAAGGGTGTAAAATATGCAACAATGAACACATTGTGCAAAACATTGGAAATTATGATTGTCCACCTCCAACCAAGACAAGTTCAAACAAATTTTCCACCTTTGATAAAAACATGAAGTATAACGAGGAAGTAGTACTTCCATTGGAACTGGTCATTAAGAAACATTCTAAATACAAAGTTAACGATGTTGAATTCAGTTCAATCATTTGCATAAATAATTCTGAATTATCTTATGAGAATCCAAATATTAAGAAAACAGAAACTTACAACAAATCTACTGTGTCAGAATGTAAAAACAACATTTCTGATAAATTGTATGTTTGCAATGCAGAATCTGAAAACATTGTTTTAAACACACACACATTTCTAAATCAAGATGCATCTACAGAACCTTGTTACAATGAAAGAATAACAGATAGTTGTGGTGCAGATACTAAGACAGAGTCCTTGAACAAAGAAAAGTTAACAAAAAGTAAATCAAATAAAAATTTTGGACGTAATCACATCTTAATACTGCCAGGATCCCCGGAAAAATACAAATGTAGTATTTGTAATAAAATTTTTCACAATAAGAAAGGAAAATGTTATCATGATGCCTGTGTAACTGGTGTCAGACCTTATAAATGTTCTTTCTGTGATAGAACTTTTACCAAACGTTCCCACTTTGAGTATCATGAACGGGTTCATAAAGGGTATAAACCTTATAAGTGCAATCTTTGTGAAAAAGCATTTCCACAACAAAATAAACTTAATAGACATATGTATTCGCACAGCAAAGAAAAACAGTTTGTTTGTCCTCAATGCAACAAAGGATATACTAAAAAGGATGATTTGAGAAATCATTTGGATACGCATAATGGTACAGCTAGATATTCTTGTAAGGCCTGTGAGAAAACTTTTGGAATATTAACTAATCTAAAGCGCCACTTAAAAATACATACAAATGAAAGACCTCACACATGTGAGGAATGCAATAAGAGTTTTAAAGACAAATCTCTTTTAATTCGCCATAAGAAAATACATGGGAAATATCGTCCATTTTCATGTGCACATTGTAGTAGAGTATTTTTATCTAAAAGTGAATTGCGACGTCATCTAACAGTTCATTCAGATGAAAAACCATTCTCTTGTACATATTGTCAAACAGTGTTTAGAAGAAAAGATAATTTACATCGTCATATTAGACACCATCACCCAGACAATCCAGACATTAAGAACACCAAATTACAGGATACTGAGTCCATCACAAATGCAAACCCAGTAAAAAGTAAACTAATAAATTCGAAACAGAAACCGAAATCAAAAAAGACCCAAAAGATGGCTTCTAATTCATTAGATTCGATGGGTAATATCACGCCGGTCATTAGAAATACTAGTGAAGTTAGTAATGCAGTTCCTGTCATTAACGGACCAATTAGTGCTAGGAAAACAGAGGATAAGACTGATATTAGAAAGAAAACGTTTACATATACAGAACCAATACCCCTAGCTGAAGCTGTAGTGATAAACAGACGTATCGAAGAGAAATTGTATCCACAAAATGTATCAAATCACAATTATTTCTTCCGAAATTATTTAAACTGTGTGGACAAGTCACATCCTCCTCTTACAAGTCAAACGTGTCGAACAAATTCTCATTCGAAGAATTCTATGCAAATGTCTCTTAATGAGAATCCGTCTTTGGAATCGGGTTCGGATTCACAGTCGAGTGTTACATGTCACAATGTAGATAAATAA
Protein Sequence: MNEECPSCKQITNTTCSRLIKDSCGHSKCRMCLIYEEQGCKICNNEHIVQNIGNYDCPPPTKTSSNKFSTFDKNMKYNEEVVLPLELVIKKHSKYKVNDVEFSSIICINNSELSYENPNIKKTETYNKSTVSECKNNISDKLYVCNAESENIVLNTHTFLNQDASTEPCYNERITDSCGADTKTESLNKEKLTKSKSNKNFGRNHILILPGSPEKYKCSICNKIFHNKKGKCYHDACVTGVRPYKCSFCDRTFTKRSHFEYHERVHKGYKPYKCNLCEKAFPQQNKLNRHMYSHSKEKQFVCPQCNKGYTKKDDLRNHLDTHNGTARYSCKACEKTFGILTNLKRHLKIHTNERPHTCEECNKSFKDKSLLIRHKKIHGKYRPFSCAHCSRVFLSKSELRRHLTVHSDEKPFSCTYCQTVFRRKDNLHRHIRHHHPDNPDIKNTKLQDTESITNANPVKSKLINSKQKPKSKKTQKMASNSLDSMGNITPVIRNTSEVSNAVPVINGPISARKTEDKTDIRKKTFTYTEPIPLAEAVVINRRIEEKLYPQNVSNHNYFFRNYLNCVDKSHPPLTSQTCRTNSHSKNSMQMSLNENPSLESGSDSQSSVTCHNVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00860610;
90% Identity: -
80% Identity: -