Basic Information

Insect: Agapostemon virescens
Gene Symbol: ZNF589
Assembly: GCA_028453745.1
Location: CM052099.1:11764272-11770828[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.7e-05 0.0024 18.9 0.9 1 23 355 378 355 378 0.97

2 8 0.0029 0.41 11.9 1.2 1 23 395 417 395 417 0.97

3 8 4.8e-05 0.0066 17.6 1.5 1 23 442 464 442 464 0.97

4 8 0.0071 0.98 10.7 3.2 1 23 472 494 472 494 0.98

5 8 0.0033 0.46 11.8 0.2 1 23 537 559 537 559 0.94

6 8 6.5e-06 0.0009 20.3 0.8 2 23 565 586 564 586 0.97

7 8 4.8e-07 6.6e-05 23.9 0.7 1 23 592 614 592 614 0.95

8 8 0.00021 0.029 15.5 1.0 1 23 620 642 620 642 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.7e-05	0.0024	18.9	0.9	1	23	355	378	355	378	0.97
2	8	0.0029	0.41	11.9	1.2	1	23	395	417	395	417	0.97
3	8	4.8e-05	0.0066	17.6	1.5	1	23	442	464	442	464	0.97
4	8	0.0071	0.98	10.7	3.2	1	23	472	494	472	494	0.98
5	8	0.0033	0.46	11.8	0.2	1	23	537	559	537	559	0.94
6	8	6.5e-06	0.0009	20.3	0.8	2	23	565	586	564	586	0.97
7	8	4.8e-07	6.6e-05	23.9	0.7	1	23	592	614	592	614	0.95
8	8	0.00021	0.029	15.5	1.0	1	23	620	642	620	642	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGATTATCTGGACTTGTGTCGGCTATGTCTCGTGAAGGATCGTGTGTCGGTGCCGATTTTCGAGGGCGATGGGAACGATCTTTTTCTGAAGATCGCTGCCTGTCTACCGGTCAAGGTTGCAAGAGAAGACAAACTACCCAAGAAAATATGTGACGATTGTGTGTATAAAATAGAATTATTTTACGAGTTTTGGAATACAACAGCGAACGCGGAAAAGCGACTGCTACAATGGCTAGGGGAAGTCAATTTGGAAGGCGGCAAACAGGGTTATGTTTCCAATGTACTCAATCCGAATGTAATGAAACAAGAACAGAGTACAGAGAACAGGTTAGATGGCAGTGTGATGCAGCAAGTGAGCGAGCATCAAAACAATATGGGCATGAGTATGATGGATAACATGGGCCTGGGTATCCCTATGATGATATCCACTACTAACCAACAGCAACAACAAATAACCTCAGTTCCTATGGACACAAGTGGCAGTTCTGTGCAAAATGTTCAAGCAGTGCCTGGTCCAAGTTCACAAGCTACGCATAACCAAATATCACAAAATCAAACTGGCTCGACGCAGCACGAAGACGAAGAAGAGAGTAGCGAAGATGAAGACAATTCGGATGACGAATGCGATGGAGATGAAGGCCTACCTGTAAAAGAAGAAAGCGAAGAAGATCCAAACAGTAGAACTATTGAACCTACGACCTTTGTAAATGTTTCTTTGGCATGCGACGAGGCGGGTCCTTCGGGACTGCAACAGCAGAAAATGACAGATATGCCTGAGATGCCAATACCACCACCAGCAGATGGGGATCCTAAAACTGGGGAGAGCAGCGAGACGTTCGGCGGATTGTCAGGGATGCTGCGTCAGATACTATCGCCGTCACCGGAAATCGGCGACCCCGGTTTATCCTTGAGTTGTACTCTGCTTCAGAACAGCTCGATGTACACGAACCAATCGTCGATGATGCAGTCGACGTTCCAAACCGTCCCGTCCCACTTGCCATCCATCTGCTCCGATCAGAATCTGCTGGACCACGTGCAGATCATCGAGTCCCATCCGTGTCCCACCTGCGGCCTCGAGTTCCGAAGTGCCCTAAAGCTGAACTATCACATGAGAACTAGCCACCTGGCGATGCCGGAGTACGAGCACAACCTTGAGAACAGCCCGGTGAGATACTCGTGTGCCGTTTGCTCACGGAGTTTCTTCGCGTTGAGCCATCTGCGGATGCACGAGGTCACGCATACCGTTCCGGCGACCTCTTGCCCGCCGATCTCGACGATCTCGACCTCGCCGATGTCGAACGTCGAGAAAACGTTCGCCTGCGATCGTTGCCAAGCTAGTTTCCGGTATCGCACGCTGCTCGAACGGCATCGACGGATGCACGAGGTCGGCCAGGAGAAACCGTACTCCTGTCCCAGGTGTCTGATGCGCTTCGAGACGCGAAATTTGTACAATCATCACGCGAAAACCCACAAACCGGTGATCATCGGTAACGATAGAATGGCCGACACGTCGGCCATAGTGTCCTCGGGTAATCCGGTCACTAGCAGCATCGCCGGGACCATGGTAGTCCCGTCGCAGAACAAGTCGATCGCCTCGTACCCCTGCGACTCGTGCTCGAAACAGTTCGCTAGCATCGAATCCTTGACCACCCACAaggctgcccataggtccagatccctcgtctgcgatgtctgcggtaaagggttcacgcatcgcaagtattacgtggtgcatcagcgcatccacaccggggaaagaccgtatctatgcgctatgtgtgggaaatcgttcacacaggcctccactcttaccgtccatcgtcgatatcacaccggtgaacgaccctacacttgcacgctgtgcggtaaaggattcgttaccagaactatcatgctgaatcacatgAAAAAGCATTGA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGDGNDLFLKIAACLPVKVAREDKLPKKICDDCVYKIELFYEFWNTTANAEKRLLQWLGEVNLEGGKQGYVSNVLNPNVMKQEQSTENRLDGSVMQQVSEHQNNMGMSMMDNMGLGIPMMISTTNQQQQQITSVPMDTSGSSVQNVQAVPGPSSQATHNQISQNQTGSTQHEDEEESSEDEDNSDDECDGDEGLPVKEESEEDPNSRTIEPTTFVNVSLACDEAGPSGLQQQKMTDMPEMPIPPPADGDPKTGESSETFGGLSGMLRQILSPSPEIGDPGLSLSCTLLQNSSMYTNQSSMMQSTFQTVPSHLPSICSDQNLLDHVQIIESHPCPTCGLEFRSALKLNYHMRTSHLAMPEYEHNLENSPVRYSCAVCSRSFFALSHLRMHEVTHTVPATSCPPISTISTSPMSNVEKTFACDRCQASFRYRTLLERHRRMHEVGQEKPYSCPRCLMRFETRNLYNHHAKTHKPVIIGNDRMADTSAIVSSGNPVTSSIAGTMVVPSQNKSIASYPCDSCSKQFASIESLTTHKAAHRSRSLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118215;
90% Identity: iTF_00864160;
80% Identity: -