Avir023950.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapostemon virescens
Gene Symbol
Prdm15
Assembly
GCA_028453745.1
Location
CM052096.1:3241519-3244271[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.2e-05 0.0072 17.4 4.3 1 23 244 266 244 266 0.99
2 12 0.0082 1.1 10.5 2.2 1 23 271 293 271 293 0.96
3 12 0.00011 0.016 16.4 1.2 3 23 304 324 303 324 0.98
4 12 0.0027 0.38 12.0 7.5 1 23 399 421 399 421 0.97
5 12 0.0049 0.68 11.2 1.6 1 23 426 450 426 450 0.91
6 12 2.6e-06 0.00037 21.5 1.3 1 23 489 512 489 512 0.95
7 12 2.7e-06 0.00038 21.5 0.8 1 23 545 567 545 567 0.99
8 12 0.00011 0.015 16.5 3.8 1 23 581 603 581 603 0.96
9 12 0.00014 0.019 16.1 4.7 1 23 609 631 609 631 0.98
10 12 0.0012 0.17 13.1 3.2 1 23 637 659 637 659 0.98
11 12 4.2e-05 0.0059 17.7 6.5 1 23 665 687 665 687 0.98
12 12 0.0002 0.028 15.6 0.3 1 21 693 713 693 714 0.93

Sequence Information

Coding Sequence
ATGGAGACCGATAGCAAAAACAGAGTTCTGCACAATGATACTGGCGATCTTTGCCGCGTTTGTCTTACAGCGAATCAAAATAACCAATACATCTTCGGCGACGCTCGAAATGATTCAGGTGTCATGGACACATCTGACTTTTTTGATAAATTTCGTTTGTGCAGCGGTGTGGAGATGATGGAGAACGATGGCCTACCTGCCACTGTCTGCATGCAATGTACAATTAAAGTGAACCAAGCATACGAATTGAGAAAACAATGCCAGCAATCAGATACTCGGTTGAGGGAACTCTATGGCAAATTAACAACGGTATATAATGCCAGTCAATTTAGGGTCACCAAGGATCAGTGCTGCCAAACAGATTACACTTTCAACTCTGGTTTCGTGAAAATAGAGGCAGATACGTTTTTTACAGTTACTCACAAAGAGTCTTCAGATTGTAAAGATGGAAAAGCAATTAATGAATTTAATGAGTCCATAGAGACCAGTAGTCATCTAAATAATATTAGTGTTAAAAGGATTTCAGCAGGATGTGAAAAGAACACAGTAGGCAGAGAAACTCACAGAACGAGAAGGACTACTATGTTCAAAAGGGTGACTTCTATGGAAAACTTAAGAAACCATAAAGAAAGGCAGAGGCAATACATAAAGAAGAACACGAACGTTAAACGGGATATTGCAGAGAATGATCATTCAGATAACATTAGGGATATGGTTTCTCAAAGCGTTTACACCTGTTCAAAATGTTCTAGGTGTTATTCCAGTAAGAGATCCCTGGACAGGCACATAGCAACGCATAATGAAAAGAAATTTACATGCGATAAATGTAACAAACAGTTTCTGCAATTGAACGATCTGATGAAGCATAATAAACTGCACAAAATCAAGGAAAAAGCTAAGCCAGTATTATGTAGCATATGCAATAAGAGTTTTAAGAAAACTGATACTATGGTAAGGCATTTAAACATCCATAAAAGAGCAAACCCGAAAGAGGTTCTCTCGATCTTGAAAGAAATTAGGGATAAACGAAAATTAGAGAATATTAACGAAGAGTCAGTTAACGAAACGAATGATGCTAGAAAAGAAATTAGAGACGCGTATGTAAATAACGATAGTAGAGGTGCGGTTAAGAAGTATATCTTAGATTCCGATGTACTAAACGCAAGGATCGATGCCTTCGATAATACGGCATTCCATCATTGTACATATTGTAATAAATCGTGTTCCACGGTCAAACTACTTCAGGACCATTTGTTGACTCACACCGAGAAGAAATTTGTTTGCAATGTTTGCAACATGAAATTCTTCCGGCTAGACAGACTAGAGAGCCATAAGAAGAGGTATGGGCACAATGAAGACGAGACGAGCTTAGAAATTTTAAAGCCTTCCGACGACAAATCAGCCATTAAGCTGATAAACAGTTGGATACGAGAGGAGCTAGACTCGGACAACGAGGAGAAGGGTTTCCCTTGTAAAATCTGTGGAAAGTCCTACGACACAAAGAGATCCTTATCGAAGCACCAGTTGAACACGCATAACTCGAAGGACGAGGGATGCACGAGTTGCGGCGACAATTGCACATGCGAGGAGAAAGACAAGGATCAGCAGAAAATAACCGAGATATCGAAGCCGTACCGTTGCGAGGAGTGTAACAAGTCCTTTGAGAAGGAGGTGAAGCTGCAGAGACATGCGAGGATTCACGAGCGTCCCAAAGAGCAAGAGGATGCGAACTTCaagcgttatttatgtcacatatgtagcaagacgttccgacagaacacaggactgatgttccacatgagaacgcacaccggctacaagccgcatgtgtgcaagtactgtggccgaggatttacatcgaattcgaactgcatcaatcacgagagaactcacaccggtgacagaccgttcgtatgccacttttgcagcgcagcattcgccaagtcgtgcaccctcaaagcgcacatcacaacgcacactggcgaggcgaactaccattgcaaaacctgtgggaaatcgttcaggaggctgaaatacttgaaagaacacaggttcacgcataccggcgagaaaccgtatgcttgcaagatttgtggcacagcgtacagtcacaatGGCAGCTTATTCGTGCACGAGAAGAAGTGCAGAGCACAGTATCAGAATGCACAGAGCTACTGCCAATCGAAGACGTCCGCCCCAGGCGTGACCCCCATCATCACAATTCTGCCACAGAATCATCTGAACGAGATCATCGTTCCATTGAATGTCCAAGATGGCAAAACGTACGACATGCAGAGGATGAGCTCCCCTAGCATAGACAGCGTGAGACCTGTGACCACGACGGACTTGCATGTTCATCCAAATACTGATAGTTCAGACGTCTCGCTGTCTGTAAAAAATTTTGCTCTTATCGGGCATGTGTTTCAATCGTAA
Protein Sequence
METDSKNRVLHNDTGDLCRVCLTANQNNQYIFGDARNDSGVMDTSDFFDKFRLCSGVEMMENDGLPATVCMQCTIKVNQAYELRKQCQQSDTRLRELYGKLTTVYNASQFRVTKDQCCQTDYTFNSGFVKIEADTFFTVTHKESSDCKDGKAINEFNESIETSSHLNNISVKRISAGCEKNTVGRETHRTRRTTMFKRVTSMENLRNHKERQRQYIKKNTNVKRDIAENDHSDNIRDMVSQSVYTCSKCSRCYSSKRSLDRHIATHNEKKFTCDKCNKQFLQLNDLMKHNKLHKIKEKAKPVLCSICNKSFKKTDTMVRHLNIHKRANPKEVLSILKEIRDKRKLENINEESVNETNDARKEIRDAYVNNDSRGAVKKYILDSDVLNARIDAFDNTAFHHCTYCNKSCSTVKLLQDHLLTHTEKKFVCNVCNMKFFRLDRLESHKKRYGHNEDETSLEILKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKRSLSKHQLNTHNSKDEGCTSCGDNCTCEEKDKDQQKITEISKPYRCEECNKSFEKEVKLQRHARIHERPKEQEDANFKRYLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHNGSLFVHEKKCRAQYQNAQSYCQSKTSAPGVTPIITILPQNHLNEIIVPLNVQDGKTYDMQRMSSPSIDSVRPVTTTDLHVHPNTDSSDVSLSVKNFALIGHVFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01071159;
90% Identity
-
80% Identity
-