Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052092.1:2122799-2125604[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.019 2.6 9.4 0.2 6 21 12 27 6 28 0.86

2 14 1.6 2.2e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.8 1.1e+02 4.3 0.4 1 12 232 243 232 252 0.89

4 14 0.012 1.7 10.0 3.1 1 23 362 384 362 384 0.97

5 14 0.0002 0.028 15.6 0.2 2 23 388 409 388 409 0.97

6 14 0.00056 0.078 14.2 4.9 1 23 420 442 420 442 0.98

7 14 0.031 4.4 8.7 0.1 1 23 461 482 461 482 0.76

8 14 0.00059 0.083 14.1 0.1 2 23 488 509 487 509 0.95

9 14 4.3e-05 0.006 17.7 4.8 1 23 537 559 537 559 0.99

10 14 1.9e-06 0.00026 22.0 3.7 1 23 565 587 565 587 0.96

11 14 0.00098 0.14 13.4 3.9 3 23 595 615 593 615 0.97

12 14 1.3e-06 0.00018 22.5 0.8 1 23 621 643 621 643 0.98

13 14 8.2e-05 0.011 16.8 0.2 1 23 647 669 647 669 0.99

14 14 0.00035 0.049 14.8 0.2 1 23 677 699 677 699 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.019	2.6	9.4	0.2	6	21	12	27	6	28	0.86
2	14	1.6	2.2e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.8	1.1e+02	4.3	0.4	1	12	232	243	232	252	0.89
4	14	0.012	1.7	10.0	3.1	1	23	362	384	362	384	0.97
5	14	0.0002	0.028	15.6	0.2	2	23	388	409	388	409	0.97
6	14	0.00056	0.078	14.2	4.9	1	23	420	442	420	442	0.98
7	14	0.031	4.4	8.7	0.1	1	23	461	482	461	482	0.76
8	14	0.00059	0.083	14.1	0.1	2	23	488	509	487	509	0.95
9	14	4.3e-05	0.006	17.7	4.8	1	23	537	559	537	559	0.99
10	14	1.9e-06	0.00026	22.0	3.7	1	23	565	587	565	587	0.96
11	14	0.00098	0.14	13.4	3.9	3	23	595	615	593	615	0.97
12	14	1.3e-06	0.00018	22.5	0.8	1	23	621	643	621	643	0.98
13	14	8.2e-05	0.011	16.8	0.2	1	23	647	669	647	669	0.99
14	14	0.00035	0.049	14.8	0.2	1	23	677	699	677	699	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAACCTCATTTGTCCAATGTGCTGTGGAGAAACTTTTAACAATCCACAGTCATTGAAGTATCATTTGTTAAGCATGACGGACAACCTGTATTGTCCTGGTTGTTCGCAACGTTCTGACTCCGTTATGGCACTTATCCAACACTTGGATCGCTGCGGACAGAATGTTGATCCAGAGGAATCGCACAATGTAAAGGAAGTGACTAAACGAGAGATTGAACACGAGCCTGAACCAGATACAACAGTACTGATGGATACCAATGTTGAAGGCATAGACCAAAGTTTCCTAGCGACTGTAAATGACAGTGGAATTATGATAGTCGGTGGGCCTCAAACTATACAAGTTGATGAAAATGGAGAAATTAAAGTCGTCGAGAAAATGGAAACAGAAGATACACAGATGGAGCAAAACTCTTTGGAGTTTAAGATGACGGAAAAAGTTCCTAGTACTGCAGAGAAGGACAATAAGTCCCAGGATCACATAGTAACTATATCGACAGCTGAGACAGAAGATAAAGATGGAAATAAAAATTTAATTACTATTCTACCCGAGGGTTCTGAGCTCCTAGATGGTAATACTGGGGCTCTGATAAATATGGACCACATAAATGATGTAGGTGAATTAGATGAAGATGGATTATTACATGTGAAAGAAGAACTCTGTGAGCTGGAACCAGAAGCTGTTTACAGTTGTACGAGCTGTGATATGAGTTTCAATTCTGTTGTCGAGCATATAAAACAATATCACGACGGCCAAGAAGTGCTGCTGGAAATAGCTGATCAATTAGACGATCTACCTACTGTACCTATAGCTAATACCTTACCAACAGAGTCAGGAAATGTAGTTAACACAAGACAAAGGCAAAGTATGAATACACTACGCACAGAGGAATGTGTAGACAGCGAGGGAAGATTGTACACACGAAAAGTTGTGCAAATAGAAAGGTTTTGGGACAGAGCTCCTGCTCAAACATCTTTGCAATCAACTAAGGCTCCCATGATAGAAAAGTTCTTTTCTAATGTAGAAGGAGTAAAAGTACGCGAGAAGAGATTGGCAGCAGCGCCAATGAGAATGTACAGATGCAATCAGTGCCTTCAACAATTTTCCAAATTAGGCAACTTTCGGGTGCACGCGTGTCTTCATGGCAACAATCGTTGCGACAGCTGTGATCAAACGTTTGCAACGCCGAAAGCATTACAATTACATGCAAAGGTTCACGAGGGTGAACCGGACCCGAATCAAAAAACATTCGTATGCGAGACATGCGGTACAGAATTCTGTTCGCATAAAAGCTTGCGCTTACATTCTCGGATGCATGCACCAGTTAGGGCAAGACATGTCGATGCACCCGAGGGAACACCTAGCGCCACGTTCACGTGTCCCGAGTGTGGCAAAACGTTAGCAGAATCGTACAAGGAAGCGCACATGGCATTGCACTCCGGCGACTCTGTGACTTGTACAGTTTGCAACCGGAAGTTTGATTCCGCTGATAGTTTAGCGATGCATGCAGCGGTGCACACGGAACTTAATCAATCACATTCGCCGACGCCGCCCGCGACGGAAACCTTGACCGCAGAGCCCACGGAACATCAAAAGCCCTATCAGTGCCAGCACTGCGGTCGTAGATTCACAAGACCCCATGAGAAGGTGAAGCATGAACGAATTCACACAGGAGAAAAGCCACATGCATGCGAAGTGTGCGGTAAAACGTTTCGTGTTTCGTATTGTTTGACTTTACACATGAGGACTCATACCGGAGTGAGACCTTACGGATGCCAGCACTGCGGCAAAAGATTCAAGGCTTCCTCTGTGTACAATCACCATTTGCTCACGCACGGTGAAGAGCGTGCTTACACTTGTCCGTATTGTCCGAAAACATTTAAAACGCGTGTTCAATTAGCGGGTCACAAGAACAGCCACACGAAACCCTTTCGGTGCACCGAGTGTTCACGGCCGTTCGCATCATTGTATGCTGCGCGTGCTCACATACAGACACATAAGAAAGACAACAATTTGAAATTTAGTTGTTACATTTGTGGTGCGTCGTATGGCAGAGCGTTCGCGTTGAAGGATCACTTGAAACAACACGGCACAGACATATTGGCCCCGCCGGAACCAGCGAGAGAAGAAGAGGTTCACGAAGGAGAGGACTTCCTGTTGGCGGAGGAAGAAGTGGAGGACGATGAATTAGTCATTCCTTCTCCGTTACCAGTAGAGCAATCGTCGGAAGCCGAGGACACGGAATAA
Protein Sequence: MGSLNLICPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQNVDPEESHNVKEVTKREIEHEPEPDTTVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVVEKMETEDTQMEQNSLEFKMTEKVPSTAEKDNKSQDHIVTISTAETEDKDGNKNLITILPEGSELLDGNTGALINMDHINDVGELDEDGLLHVKEELCELEPEAVYSCTSCDMSFNSVVEHIKQYHDGQEVLLEIADQLDDLPTVPIANTLPTESGNVVNTRQRQSMNTLRTEECVDSEGRLYTRKVVQIERFWDRAPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAAAPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKTLAESYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHTELNQSHSPTPPATETLTAEPTEHQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTDILAPPEPAREEEVHEGEDFLLAEEEVEDDELVIPSPLPVEQSSEAEDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -