Avir004960.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- -
- Assembly
- GCA_028453745.1
- Location
- CM052082.1:14412239-14413624[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-09 1e-05 25.9 0.0 1 38 10 48 10 52 0.91 2 2 8.9 1.9e+04 -3.8 0.1 15 23 140 148 139 149 0.80
Sequence Information
- Coding Sequence
- ATGAGTACCAAGAGAACACGTTCGTGGGACGAAACCAATTTGAAAACCGCACTTCACAAAATTCTAATTAGAAAGATTAGTCTGCGAGAGGCTTCTTTAAGatacggcattgcgaaaagcactttgcacgacaaaatgaaatctataaagtctggccaggaaattacattgcagtctaaactcggacgattcactaaaacgtttccaccagagtacgaagtacaattaaaaaatcacgcaaaagacttggctgatcgttgtttgccattaacgaagaaggaatttttgagacttgcttacgatttagcggttgaactaaaacttcctcatcgtttcaacacggagaaaaagatagctggtaaacatttttattatgactttatggccagacatactgatctatctctaacaacatccgagtccaccagtgtaatgcgagcggcggaactccaaaaagcgcaagttcaacgctttttcgacaccatcgataaattcaggaagcaatacaacttctctgcttcccgtatatacaattgcaacgaaacgagagtcagctactcgcaggaagacaagatatcctcggcatcgaggatgacacgccatgttggaaaattcacgtttcctgaaaggagcaacgatgtcaccgtattattttgcatgaacgccgctggacaattcgttccccctttcttcgtgttctcgagaccgagaatgaatccgcgattgttgacaaatgctcctgcaggcagcaaaggtattgctcaaccaaaaggtttttcgaacggcgaattctttctgcagtggctaaaacattttacgaaattcactggcccatcgaaagacgcccctgtgctgatcgttctagatggccacgctagtcagaaaactctggacgttataaatttttgcagaaaccacaatgttcacataatcggttctccgttacatacggctaacaggctgcagccgctgcgcaggacattcatgaagcctttcaaaaccgcgtatcgcgaacgatgcgatacgtggatcagagaaaatgcaggaattcgaataaccgattgcgaggttgcgggtttcgttggagaagcgtttgcagaagttgctcaagtagaaatagctgtatctggattcgagtgcactggaatttatcctttcgataggaatatgttttcggacagcgactatttgggttgcgacacgactaatgtgccatcggaagcaatacaacgtcgacaggactcaatttctacgatggagactcctggagcagctgctgttcgagaaaacagggacgaggaggcattacacgcgcaaccatccactagttttgctgttaatatttggaaaactatttttgaattattcccgttgcctgacgcTTAA
- Protein Sequence
- MSTKRTRSWDETNLKTALHKILIRKISLREASLRYGIAKSTLHDKMKSIKSGQEITLQSKLGRFTKTFPPEYEVQLKNHAKDLADRCLPLTKKEFLRLAYDLAVELKLPHRFNTEKKIAGKHFYYDFMARHTDLSLTTSESTSVMRAAELQKAQVQRFFDTIDKFRKQYNFSASRIYNCNETRVSYSQEDKISSASRMTRHVGKFTFPERSNDVTVLFCMNAAGQFVPPFFVFSRPRMNPRLLTNAPAGSKGIAQPKGFSNGEFFLQWLKHFTKFTGPSKDAPVLIVLDGHASQKTLDVINFCRNHNVHIIGSPLHTANRLQPLRRTFMKPFKTAYRERCDTWIRENAGIRITDCEVAGFVGEAFAEVAQVEIAVSGFECTGIYPFDRNMFSDSDYLGCDTTNVPSEAIQRRQDSISTMETPGAAAVRENRDEEALHAQPSTSFAVNIWKTIFELFPLPDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -