Avir018484.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- Sry-delta_1
- Assembly
- GCA_028453745.1
- Location
- CM052099.1:2005922-2007550[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-12 2.1e-08 34.4 0.0 8 40 65 97 60 101 0.84 2 2 6.4 1.4e+04 -3.4 0.0 30 38 163 171 163 173 0.84
Sequence Information
- Coding Sequence
- ATGATCCGTTTATTTGGATTTCAGCATGTTCCATCATCTTGTGGATTTTCCGTGGATCGACAGATAGCAGGGGAACACATCGGCGAAGACAGCTTTCGAAGTTTCCAGCTTATTCGATCGCATTGCCAAGATGGAAGATCGAGATCTTTCAGAAAGAGATACGGAAGATGCGAATTGGAACACGTGAAGACGGCCGTCGAAGCAGTGGCAAATGGTCTGTCGTTGAGGAAGGCAGCGAAGATCTTCTGCATATCGAAATCCGTTCTTCATCGATATAGCAAACAAGGGATTCCGGTTCTGATGGAGAAATTTTCGCAGGAGGATTTCGGATCTCCCGAATCGAAGTGTCCCATTGGTCTACCGATCGTCTCTAATGTCCAATTCTTCTGGCTTTCGTGTTTTTCAGAAGGGAGGACGTCAGGAGGATTTCTAAACTGCCAGAGAGTCACTTATCCGTGCAAGAACTGCGGCAAGGTGTACAATTATTACTCCAGCTTGGCGAGACACCTGAAGCACGAATGCGGTGTCGAACCGAAATTCCATTGTCCGTTGTGCCCGTATAGGACCAAGCACAAGTCCAGTCTGAACACCCATTTGAACGGAAGACACATGAAACTGCTGAGCGAGTTCTACGCGATGCCGAACGGAAACAAACTGTCATCCTCCATGGACGCAGGGAACTAA
- Protein Sequence
- MIRLFGFQHVPSSCGFSVDRQIAGEHIGEDSFRSFQLIRSHCQDGRSRSFRKRYGRCELEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQGIPVLMEKFSQEDFGSPESKCPIGLPIVSNVQFFWLSCFSEGRTSGGFLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00024905;
- 90% Identity
- iTF_00024905;
- 80% Identity
- iTF_00024905;