Avir023205.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- Mblk-1_2
- Assembly
- GCA_028453745.1
- Location
- JAQQRL010031714.1:1-1776[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-17 1.7e-13 50.7 0.1 6 45 1 41 1 41 0.95
Sequence Information
- Coding Sequence
- CAGGCCGCCCTCAGGGACATCCAGAGCGGCAAGCTCGGCACGAGAAGGGCGGCAGTCATCTACGGAATACCGCGTAGCACTCTGCGCAACAAGGTCTACAAGCTTGCGATGGAGCGCGAAAGGGACGCGTCCCTGTCTAGCACCCACTCACACCCTCACGAGCCCggcgccccagccaccaccaccaccaccatcaccaccaccaccaccactactactactactacaacaacaACACCACCAAATACGACCCAAAACGCCTCCGCGACCACTCCGCCCCCGCAAGTGGACGAGGTAGGTTTTGgggacagaacaagagagaaaaagagaacgtctgtgagaatgttcg
- Protein Sequence
- QAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERERDASLSSTHSHPHEPGAPATTTTTITTTTTTTTTTTTTTPPNTTQNASATTPPPQVDEVGFGDRTREKKRTSVRMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -