Afus010379.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapetus fuscipes
Gene Symbol
-
Assembly
GCA_951799405.1
Location
OX637343.1:3329400-3341642[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.26 18 6.6 0.2 1 21 114 134 114 135 0.93
2 16 0.13 9.1 7.5 0.5 1 21 275 295 275 296 0.94
3 16 3.2 2.2e+02 3.1 4.8 1 20 335 354 335 357 0.94
4 16 0.021 1.4 10.0 2.1 1 23 387 409 387 409 0.99
5 16 0.17 12 7.1 2.8 1 23 433 455 433 455 0.97
6 16 0.028 1.9 9.6 0.2 2 23 462 483 461 483 0.96
7 16 0.13 8.6 7.5 0.4 1 23 489 511 489 511 0.96
8 16 0.0029 0.19 12.7 3.3 3 23 519 539 517 539 0.97
9 16 0.0056 0.38 11.8 1.7 1 23 553 575 553 575 0.97
10 16 0.00059 0.04 14.9 3.4 1 23 581 604 581 604 0.95
11 16 0.006 0.41 11.7 0.6 1 23 621 643 621 643 0.98
12 16 0.53 36 5.6 0.4 1 23 649 671 649 671 0.96
13 16 0.0076 0.51 11.4 5.6 1 23 677 699 677 699 0.97
14 16 0.17 11 7.2 0.3 1 23 705 727 705 727 0.91
15 16 0.39 27 6.0 1.9 3 23 735 755 733 755 0.97
16 16 0.011 0.76 10.8 4.9 1 23 761 783 761 783 0.98

Sequence Information

Coding Sequence
ATGGATGTTGTGGTGAAGCTAGAACAGGATCCTGACGCGGAGTCAGCGGATCCACAGCTAGAACAGGATCCTGACGCGGAGTCAGCGGATCCACAGCTAGTGCACTTATGCGAACAgatagacattgaagagagtGATGTAAAGGAAGAAAGAATGGCTCTAAAGAGGGAGTGGGAAGCCGAGGACTCGGTACTGAATAATTTAAAGAATGAGGACTCTGTACTGAATGCCCCTCCACCTTATtgcttgttgaaggaatgccgcgtGCTTGTGGACAGAATCAATGTTGCGAATTATTCACGAGTTGGTGTTCCTGAGCAGAATGCTGACACTGAGCCTTATGAGTGCCCTGTCTGCAGCTTCACATGCAGTGAAGTAAAACAAATGTGGATCCACCAACTGCTGGTCTGCAACAAGCTGGAGGCTTCATTTGTCAGCTTGGTGCAACTCAAAAAAAAGTCTGGGGTCCCAGTCCAGCGCAGGAAAGATTGGAAATATTTAGCTTCTACAAAAGCCCATTACAAAATACTTCCTGGTGAAAGAAGATATGCATACTTGGCGATGGACAACTTAGGGAACAGTAGCGACTCCGAGTCTGAGTTGGTGATCGATGCTCCGCTGTGTGACGACGAGGGGGGCGAGTTGTACGCAGGCAGGGATGAGGTGTTCTTGCTTGTCGTGCAGGGCTGGGACGCCGCCCCAGCCCCTGAGGCTCCGCATGCCCAGATGAGAGAGTGTCGCGTCCTGCTAGAGAGAATTAGCATACAGCCGGGCAGAACACAACAAGGAGATGACGCAGCAGCCCAAGATCCTGACACGGAGCACGTGTGCACTGTCTGCGGCTTCATGAGCAGTCACATGAGGGAGATGCGGATCCATCAGATGCTAATCTGCCAGAACCTGGAGACTGTGTCTGAAGATACATCACACCTAGTTGCTCATGAAGACATTTCTGTAACTGAACAAGAAATGCCTGCGGCTGCCAGCACGggcataaatttctacaaatgtGATAAGTGTAAATACAAAACTGGCAAATTAACAACCTTCAACAGACACAAGACATGCCACATCGATATAAAGCAGTTTGGATGTGACAAATGTTGTGCGTCCGCAAAACACAAGAAAATCATCATATCTCCCAACAAGAAAAATGGGTTTCAATGTTACAGATGTAGCTATAAAACTGATAGAGAAGTTAACATAAAGAGGCATTTGATGACTCATATCGGAAGGGAAGGGTACTTATGTGACGAGTGTAAGAATCCTAGAAAGAAAGCTGTCGAACTGAAATcgtttgcatgtgatcagtgctCCTACCAATCAACTAAAGCACACAACCTCAGCATGCATAAACTGAAGCATGCTGATATCAAGAAACTTGAGTGCGGCCtatgtgattataaaactaacTACTCTATTGCTTTGAGAAACCATAAGATGATTCATACTGGAGTGAAACAgtatgcatgcagcatgtgcagcTTCAAGAGTATTCAAGTAGGCAGTTTAAAGAAACATGAAATGCTTCACACTGGAGAAAAACCTTTAGCGTGTGACGAGTGTGATTTCAAATGTATTCAATCTGGTAACTTACACAACCATAAGCGAATGCACGCCGGGCTCACATATACACCTCAAGATCCTAATGCGTCCTACTCTTGTCATCTGTGTGATTTCACAACTAATCGAGCTAGTGCGATGTATAGACACAAAGCCATTCACACGGGAATCAAACGGCACAAGTGCGATATGTGCGACTACAAAACTAGTGACATATCAAATTTGAAAAGACACAAACAGAATAATCACAGAAGCTTAACAAATCTGTGTAATGCTGTATCCCTTGGAGCCAAGCAATATCCGTGCGGCAAGTGTAACTTTACAACTGATGAGCTGCGTTCTTTAAGAGAGCATCAGATGACTCACGTCGCACCTAAACCGTATGCGTGTGACATTTGCGAGTTCAGAACTGGCTACAGCACAGTACTGCAACAGCATAAGCAACTGCACACCGGTCACAAGCCATTTGCATGCGAGGAgtgcgattacaaatgctacCGACCTTGCAATTTGagaactcacaaattaaaacacCCCATAGAAGGGTTTTATGCGTGCGATcggtgtgattataaaactgaAACCTATGAAGGATTAAAACTGCATTTGCCGACTCACAACGATCACTTGTTGTATGGCTGCGACAAATGCACTTACAGAACCAACAAGCTACCGCATTTGAGGCTGCATGAAATGTCTCACATTGAAGAGAGGCCGTACGCATGCCAGTTTTGTGAGTGCAAGTTCAAGCATTTGCCACTTTTGACAAATCATGAAAGAACTCACATAAGAATCAAGCCGTACACGTGA
Protein Sequence
MDVVVKLEQDPDAESADPQLEQDPDAESADPQLVHLCEQIDIEESDVKEERMALKREWEAEDSVLNNLKNEDSVLNAPPPYCLLKECRVLVDRINVANYSRVGVPEQNADTEPYECPVCSFTCSEVKQMWIHQLLVCNKLEASFVSLVQLKKKSGVPVQRRKDWKYLASTKAHYKILPGERRYAYLAMDNLGNSSDSESELVIDAPLCDDEGGELYAGRDEVFLLVVQGWDAAPAPEAPHAQMRECRVLLERISIQPGRTQQGDDAAAQDPDTEHVCTVCGFMSSHMREMRIHQMLICQNLETVSEDTSHLVAHEDISVTEQEMPAAASTGINFYKCDKCKYKTGKLTTFNRHKTCHIDIKQFGCDKCCASAKHKKIIISPNKKNGFQCYRCSYKTDREVNIKRHLMTHIGREGYLCDECKNPRKKAVELKSFACDQCSYQSTKAHNLSMHKLKHADIKKLECGLCDYKTNYSIALRNHKMIHTGVKQYACSMCSFKSIQVGSLKKHEMLHTGEKPLACDECDFKCIQSGNLHNHKRMHAGLTYTPQDPNASYSCHLCDFTTNRASAMYRHKAIHTGIKRHKCDMCDYKTSDISNLKRHKQNNHRSLTNLCNAVSLGAKQYPCGKCNFTTDELRSLREHQMTHVAPKPYACDICEFRTGYSTVLQQHKQLHTGHKPFACEECDYKCYRPCNLRTHKLKHPIEGFYACDRCDYKTETYEGLKLHLPTHNDHLLYGCDKCTYRTNKLPHLRLHEMSHIEERPYACQFCECKFKHLPLLTNHERTHIRIKPYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-