Afus021206.2
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637359.1:3163039-3167472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.79 54 5.0 0.0 2 20 93 111 92 113 0.92 2 20 6.6e-06 0.00045 21.0 0.9 1 23 139 162 139 162 0.98 3 20 0.16 11 7.2 1.1 2 22 164 184 164 186 0.84 4 20 0.0058 0.39 11.8 0.2 2 23 406 427 404 427 0.92 5 20 2.2 1.5e+02 3.6 0.2 3 23 696 716 694 716 0.93 6 20 0.27 18 6.5 1.2 2 23 723 744 722 744 0.96 7 20 0.75 51 5.1 1.5 3 23 752 773 751 773 0.90 8 20 0.053 3.6 8.7 2.5 3 23 809 830 808 830 0.92 9 20 0.0034 0.23 12.5 0.7 1 22 835 856 835 859 0.90 10 20 0.0083 0.57 11.3 1.1 1 23 868 891 868 891 0.97 11 20 0.00011 0.0077 17.1 0.1 2 23 898 919 897 919 0.97 12 20 0.048 3.3 8.9 2.3 1 23 926 949 926 949 0.95 13 20 0.00029 0.02 15.8 1.4 1 23 955 977 955 977 0.98 14 20 5 3.4e+02 2.5 2.5 1 19 983 1001 983 1006 0.73 15 20 0.89 61 4.9 1.2 1 12 1019 1030 1019 1035 0.86 16 20 0.3 21 6.3 0.3 2 23 1049 1071 1048 1071 0.95 17 20 0.0016 0.11 13.5 0.3 1 23 1077 1100 1077 1100 0.98 18 20 0.04 2.7 9.1 1.4 1 23 1106 1128 1106 1128 0.98 19 20 0.055 3.7 8.7 0.4 1 21 1134 1154 1134 1157 0.88 20 20 0.0054 0.37 11.8 1.7 1 23 1215 1238 1215 1238 0.92
Sequence Information
- Coding Sequence
- ATGGAGTCAGAACCTGAGGGGGACAGAGAGAAGGGAAGGGGCGCAGCGCTACAGCCAGGAGCTTGTATTGTCATTAAACGGGGACCAGAAGACAAAGGCAAGGAAACCAAAACAGCTGTAGCTTCCCAAGATGAGAGCGTCGACTTGCTGTCATCTGATGACGAGCAACAAAATGTAGTTGCACCAGAGCAAGTGATGCGTTCCTCTGTGTCCGAGGTAAACAATACACCTAAGGATCCTATTGCCAACTCAGGAAAAGTGCCAACTGGAGTTCAGAAGTGTAGAGGTTGCTTTGAAGTATTTCCTGATCAAATTAAAATGATGTACCACATAGCAATATGTGAAAAAGTACAGAAAGGAGATGTTTCCAACAGCAGTTCAGAAAAGCTGCGTGCTTTATCTAAGGTTGTGGTGTATCCATGCTCCACGTGCCCCAAGAAGTTTATCACAGAGGAAACCCTGCAGAAGCACCAGCAGACGCAGCATGCAAGGTGCCAGTACTGCCAACAAATATTCAAGACCAGCACTGAGCTGGTCTTCCATAAAAATGAGATGCACAAGCACATTTGTCGAATATGTGGAGATGTCTACCATGCCAAAGAACCTGCAAAGAGGCATTGTGGTGTTCCACAAGGTGAAATAGAAGCAGAAGCTGCTATTCCAGATAAAAATGTTGAGGGAAAAGAAGAAATCGTCAAGCCTACACTACAATACACTACATCTGGACTTCTTGTGGCTTCTAATGCCCCTGAAGCACCCAGTGACAATGCTAACAAAACAACAAGTACAAATGTTGATTCTAGAAACTTATACCAACTTCTAGAATCAGGTACTTTTGATCCATTTGCTTACACACAGAGAATGGATGTGCTGGAAAAAGCCTGCAGTCTCCTGAAGAAATGTGTATTTTGTTCTATACCATATAAAAACACAAGCAATTGTAGGATGCATGTTTCGTATTGTAGTGCATTAGCAGTTTACACAAAGGAGAATCAGAAATCACGCGCCCTGCCACCTCCCCTGGCGTCTGTCCAACCTAAACCATATGACACGTTTGCTGCCCCACTCTTGTCAATAATAGATCCCCCAGCTGGCACTCATCAGCAGGCTTCTAAGCGCTTACCTCAATTGACCAAATCTAACAACTCCGAGTCGGATAAAGTACTCAACTTCAACTTTGTTGATATTCCCTGCATTCCGCTAGAACCCAAGTGTGAGTGTCTCATATGTGGAGCAAGCACAGCCTCTGCAGAGAGCCTCCTGACGCACATGGAGCTTCACAAGAATGTGGACCCTCTGGCAGATGTCATCAAGGAAGAGGACTGCTCCACTCAGCCAGGAGATCAGGAAGAAGAGCATCAAAGTCTGTTACAATCAGTAAAACATGCTGTGACACAATCACAAATACTTGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACTTGCTGTGACACAATCACAAATACATGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACTTGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACTTGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACTTGCTGTGACACAATCACAAATACATGCTGTGACACCATCAAAAATACATGCTGTGGCACCATCACAAATATATGCTGTGACACCATCACAAATACAAGCTGTGACACCATCACAAATACATGCTGTGACACCATCACAAATACATGCTGTGACACAATCACAAATACATGCTGTGACACAATCAAAGGAACAGAAGGATGTTGTGAAACCAACAGAAAAGGACATCTGCTTGCAACCTAGCAGCATCACCTCTGAGATTTCCAAATTAGCAGGGGTGAAGGTCCGCATTCCAAATACTCCTGTCATTGGAACCCGCTTCAGAAATCTCAAATGTTTGATTTGCTTCTCCAAGTTTGCTGATTGGATAATGCCAATACGAGGGACAAAAATTCAAAGGGCTGCACACATGAAGAAAGTTCATCCCACCATCCTGGACTGCTCTCTGTGTGACCTCTTATTCCAAACTAAAGAAGAGCAAGCGCAGCATCTCACCTGGCACTCCAAGGAAGAGGAGATCAAGTGTGAGCGCTGCGACAAGATGCTCATTGGCCAATTGAAGTACAAATGGCATATGTTACACCATGATGACGAGAATGCCACCTTGTGCTCCATATGTGGATTCAAATGCGCCACCAAACTTGCCCTGACTTTGCACAACTTCAGGATACACCAGATCTCGGGAGATGCTCTGTGTGTGGAGTGTGGTATCACTGTGCCCAGCATCATGTACGGCTGGCATCGCCGCCAAAAGCACGTCGCCAAGTTGCCAGGCATGTGTGACATGTGTCCGCGCGTCTACAGGGAGAAACGCTTCCTGAACCGCCACAAGCTGGAGTGCCACTCCGGGAATGAGCACCCCTGCAAGACCTGCAACTTGACCTTCTCCACAGGAGCTGAATTGGCTCAACATCGTCGGGAGGTGTTCCATGAACCAGCCCCTCCAAAAAAACTGTATACCTGCCAAGACTGTGGACAAGAAATGACCAGTACCTGGAACTTCCGCGTTCACCGACGCTATCAACATGAAAAGCATCTCTTTGTGTCCTGCACAGTGTGCCCCATGAAGTTCCCCTTCGCTCAGAATTTAGAAAAACACATGTTGATGCACCGAGATAATACGGCTGAACATGTCTGCTCCTTCTGCACGCAGCCTTGTGATTCTGCCGAGTCTCTGCAGCAGCACTTGCAGAACATGCATCAGGGAGAGGGCTCCTTCACATGCAGCTTCTGCCAAGAAGTGTTTCATCGCCAAGAATCCCTCATTATCCATGAGCGCATACACACCAACGAGAAGCCTCATGCCTGTAAGGTGTGCTCCAAAACTTTCCAAGATATTGTTGCTTGCAAGCAACATGAAGCTAGGAAGCACAAAATGCATTCTTCCTTGCAAGCCACTGTTCATAAGTATACTTGCCAAGAATGTGGAAAAAGATCGTCCTCTCTCTGTCGCTTACACGTTCAACAACGCACTCAACCTCAAAAGGATCTCGTTTTGTCTTGTCCAGCATGTTCCATGAAGTTCCCCTCCGCAAAGGCAAGAGATAGACACATGCTGAAGCGCCATGGCGCTGAGGCCCAGTTCAAGTGCTCCATCTGCAGGATGTCATTTATTTCCGAGTATTCTTGGGGCACACACATCCAGACAGTGCATCGGACAGAGCGCCCCTTCTCATGTCAGTATTGTCCAGATAAGTTCAAGAGCAAGTTCGCTGCTACCCTTCATGAACGCACACACACAGGCGAAAAGCCTTATGCCTGTAAAGTGTGCTTCAAAACTTTTGGACAGATATCTGCCCGTAAGCGACATGAAGTTAATGTGCACAAATTGCATTCTGCTGCTTCTGGCTCCACCTCTTCTCCTGAGTACATGGTCATAGAAGAGCCGGGCATAGAGGAGCCTCTGCCTCTACTGGACCAGTCTCCGCCAGAAGGAAATCGCGCTGCTGCCTTTATTGCTACCCTTCGTGAGCGCACACACACAGGCGAAAAGCCTTATGCCTGTAAAGTGTGCTTCAAAACTTTTGGACAGAAATCTACCCGTAAGCGACATGAAGTTAAAGTGCACAAATTGCATTCTGCTGCTTCTGGCTCCACCTTTTCTCCTGAGTACATGGTCATAGAAGAGCCGGGCATAGATGAGCCTCTGCCTCTACTGGACCAGTCTCCACGAGAAGGAAATCGCGCTGCTGCCTTCATTAAACACACATACACTAGGCGCTAG
- Protein Sequence
- MESEPEGDREKGRGAALQPGACIVIKRGPEDKGKETKTAVASQDESVDLLSSDDEQQNVVAPEQVMRSSVSEVNNTPKDPIANSGKVPTGVQKCRGCFEVFPDQIKMMYHIAICEKVQKGDVSNSSSEKLRALSKVVVYPCSTCPKKFITEETLQKHQQTQHARCQYCQQIFKTSTELVFHKNEMHKHICRICGDVYHAKEPAKRHCGVPQGEIEAEAAIPDKNVEGKEEIVKPTLQYTTSGLLVASNAPEAPSDNANKTTSTNVDSRNLYQLLESGTFDPFAYTQRMDVLEKACSLLKKCVFCSIPYKNTSNCRMHVSYCSALAVYTKENQKSRALPPPLASVQPKPYDTFAAPLLSIIDPPAGTHQQASKRLPQLTKSNNSESDKVLNFNFVDIPCIPLEPKCECLICGASTASAESLLTHMELHKNVDPLADVIKEEDCSTQPGDQEEEHQSLLQSVKHAVTQSQILAVTPSQIHAVTPSQILAVTQSQIHAVTPSQIHAVTPSQILAVTPSQIHAVTPSQILAVTPSQIHAVTPSQIHAVTPSQILAVTQSQIHAVTPSKIHAVAPSQIYAVTPSQIQAVTPSQIHAVTPSQIHAVTQSQIHAVTQSKEQKDVVKPTEKDICLQPSSITSEISKLAGVKVRIPNTPVIGTRFRNLKCLICFSKFADWIMPIRGTKIQRAAHMKKVHPTILDCSLCDLLFQTKEEQAQHLTWHSKEEEIKCERCDKMLIGQLKYKWHMLHHDDENATLCSICGFKCATKLALTLHNFRIHQISGDALCVECGITVPSIMYGWHRRQKHVAKLPGMCDMCPRVYREKRFLNRHKLECHSGNEHPCKTCNLTFSTGAELAQHRREVFHEPAPPKKLYTCQDCGQEMTSTWNFRVHRRYQHEKHLFVSCTVCPMKFPFAQNLEKHMLMHRDNTAEHVCSFCTQPCDSAESLQQHLQNMHQGEGSFTCSFCQEVFHRQESLIIHERIHTNEKPHACKVCSKTFQDIVACKQHEARKHKMHSSLQATVHKYTCQECGKRSSSLCRLHVQQRTQPQKDLVLSCPACSMKFPSAKARDRHMLKRHGAEAQFKCSICRMSFISEYSWGTHIQTVHRTERPFSCQYCPDKFKSKFAATLHERTHTGEKPYACKVCFKTFGQISARKRHEVNVHKLHSAASGSTSSPEYMVIEEPGIEEPLPLLDQSPPEGNRAAAFIATLRERTHTGEKPYACKVCFKTFGQKSTRKRHEVKVHKLHSAASGSTFSPEYMVIEEPGIDEPLPLLDQSPREGNRAAAFIKHTYTRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -