Afus018778.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- YY2
- Assembly
- GCA_951799405.1
- Location
- OX637355.1:4684330-4691294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 1.3 10.1 3.9 1 23 394 416 394 416 0.99 2 14 0.013 0.9 10.6 0.3 2 23 424 445 423 445 0.94 3 14 0.00056 0.038 15.0 1.7 1 23 449 471 449 471 0.98 4 14 2.9 2e+02 3.3 0.4 1 23 480 502 480 502 0.93 5 14 2.9 2e+02 3.3 0.4 1 23 511 533 511 533 0.93 6 14 2.9 2e+02 3.3 0.4 1 23 542 564 542 564 0.93 7 14 2.9 2e+02 3.3 0.4 1 23 573 595 573 595 0.93 8 14 0.00012 0.008 17.1 0.8 1 23 632 654 632 654 0.98 9 14 0.00013 0.0088 17.0 0.1 1 23 660 682 660 682 0.96 10 14 0.0025 0.17 12.9 1.8 1 22 688 709 688 713 0.94 11 14 0.00015 0.01 16.7 0.1 1 23 721 744 721 744 0.95 12 14 0.0057 0.39 11.8 2.3 1 23 750 773 750 773 0.96 13 14 0.11 7.3 7.8 3.3 1 23 782 804 782 804 0.94 14 14 5.2e-06 0.00035 21.3 0.4 1 23 810 833 810 833 0.97
Sequence Information
- Coding Sequence
- ATGTCCCGCAAGTCCAACCCTTCCTCAGGGATCACATCCTTCAGGGAGACTGTCTGCCGCACTTGCTTGCTGACTTCTCCCAAGGCGCTCCATCCCTTACAAGACCAAGACAAACAGGCGCTCCTCAACCTCTGCAACGTCCAGGTGAGGAATGTTGGGGTGCTGCCCTGCCTGTCTGGAGTGCTCGCCCCTGCTATAGCCTTGTGTTGTGTTCAGGTGAGGAGTGTTGGGGTGCTGCCCTGCCTGTCTGGAGTGCTCGCCCCTGCTATAGCCTTGTGTTGTGTTCAGGTGAGGAGTGTTGGGGTGCTGCCCTGCCTGTCTGGAGTGCTCGCCCCTGCTATAGCCTTGTGTTATGTCCAGGTGAGGAATGTTGGGGTGCTGCCCTGCCGCCTGTGTGGAGTGTGTCGGCTGCGCCTGCAGCGCATGCAGCAGTTTGTCTCCCAGGCACGCGGGGCCCAGGACGCCCTCATGGACTACCTGCTCAACAACCACGCTGATAACGACAATGATCCCATCCAGCCGATAAACATGGACACCCTGAAAGATCTCCGAGGCAGATGTTTCACAGCTGAGGGGCTGGGTTTCTCCAAGCTTGTCACAGTGGACTGCAAGGAAGATGATGAAACCAAAAGTGAAAACTCCGCCACATTCACAAACTGCATAAATTGGTTGTCCTTGGAAGACAATGCCAGCCGGAAGAAACCCAGCAAAGCCGACATCAAGCATGAGGTAGAGCTCAGCGACGAGGAGTCAGGAGGCGGGGGAGAGTACGGGGAAGGACTGGTAGAGAGGATCAAGGTGGAGCCGGATATTATGTTGAAAGTTACAACTAAAACAAGGGCTGGAAAAAAAGTTTTCCCTCAAAAACCCAAAGAAACTAGGAAAAAGGTTATTATGAAAGTGGTGAAGACATCTAAAGCAGCTGGCAGGACAAAAGCAGATATTTCTGGAGAAGTCAGCTGCGGTGTTGTGCAGGACGATGATGCAACCATGGACAAGGGTAGCTCGAGTAGAGAGAACAAAGCCTTAGATGATCCGCCCCAGCGGAGCAAGTCAACACACAGGGACCCCTTCCAGCATTTTCACCGCAGCCTGGTGACCATCATCAAGTTGACCTTGGACGAGCAGCTGCAGGAGTTGGAGGAAGCGAGGAAGAGTGACAAGTACACGCTGTCTCCGTACAAGTGTGTCATGTGCGCCAAACACTTTGCTTATGAGCTCACATACAAAACCCACATGAAGAAACACGCTTTGGAGGCGGGCAAGATCAGCTGCAGCTTGTGTGGAATGCGCACTAAGTCCATGTCGGCCCTCAGCAAGCACACCGCGCTGCATGAGCTGCGCTACGAGTGCAAATTGTGCGGCAAGAGGTTCAAGAGCCGCCTGGCCATCTCTACTCACACCCAGAAGCACAACAAGGGCATTCCACCCGACAACTACCTGTGCAGGCGCTGTGGGGAGATCAGCCCGTTAGTATACACACTCTCTACTCACACCCAGAAGCACAACAAGGGCATTCCACCCGACAACTACCTGTGCAGGCGCTGCGGGGAGATCAGCCCGTTAGTATACACACTCTCTACTCACACCCAGAAGCACAACAAGGGCATTCCACCCGACAACTACCTGTGCAGGCGCTGTGGGGAGATCAGCCCGTTAGTATACACACTCTCTACTCACACCCAGAAGCACAACAAGGGCATTCCACCCGACAACTACCTGTGCAGGCGCTGTGGGGAGATCAGCCCGTTAGTATACACACTCTCTACTCACACCCAGAAGCACAACAAGGGCATTCCACCCGACAACTACCTGTGCAGGCGCTGTGGGGAGATCAGCCAGTCATACGCAGCTCACCGCATCCATCAGAGAAGCCACGAAGACAAGAGCAGATTCAAGTGTCCGCACTGCCCCAAGGCCTTTGCAGGGGCGCACCGCTTGGCCGATCACGTCAACCGCCACGAGGGGATAAAGAAGCACCCCTGCCCGGAGTGCGGGAAGATGTTTGTGAGTCGCGTGGATATCCTCAGCCACCTCGTTACTCACTCCAACAGGCGGGAGTTCTACTGCGTGGAGTGCAACGTGACCTTCAAGACGCGCGGCAAGCTCTCCCTGCATCTCAAGACAACCAAGAAGCACCTGCTGCCTGAGAATCTCAAGTTTAGATGTGAGGAGTGCCCCAAGGCGTACGACACGGCCAGCAAGTTGTCCCAGCACGTGGACGTGGTGCACCGCGGCGTGCGCCCCTACACGTGCAGCGTGTGCGCGCTCACCTTCAGGACCTACAGCGCCGTGCGACACCACAGGGCGCGGAAACACGACAACAAGACACAGCCCAAAGACCACATCTGCCAGTTCTGTAATAAGGGATTCTCCAGTACGACTATCCTGCGGCACCACGTGCTGATCCACACGGGGGAGAAGCCCTTCTCCTGCAGCTACTGTGGCACGGCCTTCAGGCAGAAGGCCGCCATGACCACGCACATCCGGCTGGTGCACCTCAAGGTCAACCGCAACGGCACCAAAAGAACCTGA
- Protein Sequence
- MSRKSNPSSGITSFRETVCRTCLLTSPKALHPLQDQDKQALLNLCNVQVRNVGVLPCLSGVLAPAIALCCVQVRSVGVLPCLSGVLAPAIALCCVQVRSVGVLPCLSGVLAPAIALCYVQVRNVGVLPCRLCGVCRLRLQRMQQFVSQARGAQDALMDYLLNNHADNDNDPIQPINMDTLKDLRGRCFTAEGLGFSKLVTVDCKEDDETKSENSATFTNCINWLSLEDNASRKKPSKADIKHEVELSDEESGGGGEYGEGLVERIKVEPDIMLKVTTKTRAGKKVFPQKPKETRKKVIMKVVKTSKAAGRTKADISGEVSCGVVQDDDATMDKGSSSRENKALDDPPQRSKSTHRDPFQHFHRSLVTIIKLTLDEQLQELEEARKSDKYTLSPYKCVMCAKHFAYELTYKTHMKKHALEAGKISCSLCGMRTKSMSALSKHTALHELRYECKLCGKRFKSRLAISTHTQKHNKGIPPDNYLCRRCGEISPLVYTLSTHTQKHNKGIPPDNYLCRRCGEISPLVYTLSTHTQKHNKGIPPDNYLCRRCGEISPLVYTLSTHTQKHNKGIPPDNYLCRRCGEISPLVYTLSTHTQKHNKGIPPDNYLCRRCGEISQSYAAHRIHQRSHEDKSRFKCPHCPKAFAGAHRLADHVNRHEGIKKHPCPECGKMFVSRVDILSHLVTHSNRREFYCVECNVTFKTRGKLSLHLKTTKKHLLPENLKFRCEECPKAYDTASKLSQHVDVVHRGVRPYTCSVCALTFRTYSAVRHHRARKHDNKTQPKDHICQFCNKGFSSTTILRHHVLIHTGEKPFSCSYCGTAFRQKAAMTTHIRLVHLKVNRNGTKRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -