Afus011421.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637344.1:12756023-12763749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.86 58 4.9 1.3 3 16 226 239 225 241 0.90 2 13 2.5 1.7e+02 3.5 6.1 3 23 449 469 448 469 0.96 3 13 0.0082 0.56 11.3 0.2 2 23 476 498 476 498 0.97 4 13 0.023 1.5 9.9 0.5 2 23 513 535 512 535 0.95 5 13 0.072 4.9 8.3 3.0 1 23 544 567 544 567 0.97 6 13 0.028 1.9 9.6 0.8 1 23 585 608 585 608 0.92 7 13 0.87 59 4.9 0.1 1 20 613 632 613 634 0.93 8 13 4.1e-05 0.0028 18.5 0.3 1 23 678 700 678 700 0.98 9 13 6.1e-05 0.0041 18.0 0.7 1 23 706 729 706 729 0.97 10 13 0.0041 0.28 12.2 1.3 1 23 735 757 735 757 0.94 11 13 0.0081 0.55 11.3 1.8 1 19 763 781 763 785 0.93 12 13 0.00027 0.018 16.0 1.7 1 23 791 813 791 813 0.97 13 13 0.00021 0.014 16.3 0.1 1 23 819 842 819 842 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCTAAGACAGGAGACGTGATATATTTCATACCACACGACATGGTCCGCCTCAAGCCCGGAGCTGTGCCACAAATATTCTCTGATGATGCTCCCATCATCCCAGTCACAAGCAGGAAGAAAAGGAAGGCGGCCGCACTGGCCATGGAGAGAACTGCTTCCACTTCTGCTCAAGATAATCCTGGGAAAGAAAAGCCACGAAAAAGGTTGAAAAACcaggatttgaaaaaaaatgataaatccACCCTGTGCCGGGGCTCAAAGCGCATCAGACGTAATCCTGAGAAGCCGGCAAAGATAGAAGAGTCGTCTGTCAGCAGCAACAATGAGGTTGATACACAGGTATCGCTAATTCCACTGTTCTACAAACTACCGTCATTCCAGCTTAAACCTAACAACTGCATGCAAACTGATGTGCGGGATCAGCGCTCAGTTTTACACACCATAAAGCGAGACATGgactttaattttataaaaatagaagTACCTAACTCACCTATTTTTGATTCAGTGGAGATAGATGAGAACATTCTACATTGTCGCCTGTGTGCAAATATGATAAATCTAGAGCATGCCATTCATATATTTGACAATGACGGAGGCATAAATGTGAAGATAAATGTATGCCTGCCCATTAGTGTAGAACCAGCCGACGAGCTTCCACAAAACATCTGTAAAAAATGCCACAAACGCCTCAAGTCACAGCATCAGTTTTACAATGATGTGCTGAAAGCCGAGGCAACATTGCTCAGTGCAGCCTTCAAGAAGAGAGGAGATAAAGTCAGCGATCATGATCATCTATCTGAAGAAAATGACGACAATAGTAACAGTGCTGATGTTGATACAATAAGTGTGAATAAGTATATTCAAGAAGACTCGGATAGTCGGGACAGTAGTGATCTAGATGTAAATCCATCTCAAGATAAACCTCCCTCCACCCCACACAATGTGGCATTGTTAGAATCATGTCATGTGTCTTTAACAAGAGCGTGCACTAAGAAAGAAATAATTGATACAAGTAGCCAACAGTCATCTAATTTATTTCAATGGTcttcaataaaaaaagaaagCATTACAGATAATACTGCTTCATGGAATAACATTGAAGTTACATGGAATACTCAAAAAACGGAGGACGTAATGGAGGCAAAAGCTAATCAACACGCCTGCGTTATTTGCAAATGTGACGAGCCCAGTACGGAAAATGAATTGAGAGAACATTTACTTAAATGCCACGGATTGTACAAAGAATTAATAAAGGTAGAGAAGTGTTTACCGGGGAAGGCAGCTCCAGGCTCACTTGATGCTGAGCCCGATGTTAAACAGTCTATAAGAAACTTTTGCTCTTCTTGTCACAAGTTGTTCACAGACTCTAAAAGATATTACCATCATTTACAGTGGCATGACAAGGGGAAGCCAGAAAAATGCCGCTTTTGTGAAGAGAGATTCCCAGAAGAGGAGGAACTCTACCAGCACATGCTTACAGTTCACAATGGATTCATCGGAGGGAGAATAAAAGTCAGCAGGAAGTGGTCGTGTCCCAGCTGCAGAGAGAACTTCTCCACTGAAGTGCGGCTCCTGAGACATGAGAAGAAAATGCACGGGAAGAGTATAACGTTTGCATGCTACCACTGCTCGCAGTGCCTGGAAGCCTTCGCTAATCCTCAACAGGTCTGTGACCACATATGCATGGAGCATGAAGCAAACGAGGAAAGTGTTAAATCTGTGATGATTAGAGCTAACCGCCTTTACTCCTGTGAATACTGCTACAAGTACTTCACTACTGTCATTGGACTTGACCAGCACAGGCTGGCCAAGCACGTGATCCGAGTGTTCAACTGCCGCTACTGTCCCCTCCAGTTTGAGCTGCACGCTGAGCTCGGTGAGCACATGGACAACACTGCAGAGCACTCCGCGCCTCACACCACCAGAACCTCTTGGTTGCCCTCCTACATCAAGGACATGCTGGTCTGCGAGCTGTGTGCCAGGAATATGCAACTGCAGAAACCCTGTGTATCCTTGCGCAAGTTCCAGTGCAATGACTGCTCCAGGGCATACATGAGCAAGAATGCACTTATTCAACATATGTTGGTCCACTCAGCATACAGCCCTTACATGTGTGATTTGTGTGGAAGGGCATTTAAGCAGGCCATCAGgctaaaacttcatcaaaggAACTTCCACTCTTCCATAAAACCGTTCCTCTGCTCTGTGtgtaacaaaacatttaaatataagGGTGACAGAGACAACCATGTTCTACGGCACGGTGATGATCGTCCTTATAAATGCAACGACTGCCCCAGATCATTCAAGTGTAAAGCCGACCTAAAGGGACACGTCTGGTTACACCTCAACATCAGGCCTCATGTCTGCAAGATCTGCAATGCAGCTTTTAAAATAAAGACAAGTTTGAAGAATCACCAGCTGTCTCACTCGGGGGAGAAGCCCTATCCTTGTAAGTTCTGTGCTCGGCCCTTTGCTCGGGTGGGAGACCTGAGGAAGCATGTGAGGGTGCTGCACGGGGCTAATTACGATGAATAG
- Protein Sequence
- MLSKTGDVIYFIPHDMVRLKPGAVPQIFSDDAPIIPVTSRKKRKAAALAMERTASTSAQDNPGKEKPRKRLKNQDLKKNDKSTLCRGSKRIRRNPEKPAKIEESSVSSNNEVDTQVSLIPLFYKLPSFQLKPNNCMQTDVRDQRSVLHTIKRDMDFNFIKIEVPNSPIFDSVEIDENILHCRLCANMINLEHAIHIFDNDGGINVKINVCLPISVEPADELPQNICKKCHKRLKSQHQFYNDVLKAEATLLSAAFKKRGDKVSDHDHLSEENDDNSNSADVDTISVNKYIQEDSDSRDSSDLDVNPSQDKPPSTPHNVALLESCHVSLTRACTKKEIIDTSSQQSSNLFQWSSIKKESITDNTASWNNIEVTWNTQKTEDVMEAKANQHACVICKCDEPSTENELREHLLKCHGLYKELIKVEKCLPGKAAPGSLDAEPDVKQSIRNFCSSCHKLFTDSKRYYHHLQWHDKGKPEKCRFCEERFPEEEELYQHMLTVHNGFIGGRIKVSRKWSCPSCRENFSTEVRLLRHEKKMHGKSITFACYHCSQCLEAFANPQQVCDHICMEHEANEESVKSVMIRANRLYSCEYCYKYFTTVIGLDQHRLAKHVIRVFNCRYCPLQFELHAELGEHMDNTAEHSAPHTTRTSWLPSYIKDMLVCELCARNMQLQKPCVSLRKFQCNDCSRAYMSKNALIQHMLVHSAYSPYMCDLCGRAFKQAIRLKLHQRNFHSSIKPFLCSVCNKTFKYKGDRDNHVLRHGDDRPYKCNDCPRSFKCKADLKGHVWLHLNIRPHVCKICNAAFKIKTSLKNHQLSHSGEKPYPCKFCARPFARVGDLRKHVRVLHGANYDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -