Afus014841.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637349.1:17095376-17101405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00069 0.047 14.7 0.3 1 23 252 274 252 274 0.98 2 11 0.28 19 6.5 0.4 2 23 282 303 281 303 0.96 3 11 0.23 15 6.7 2.2 1 22 307 328 307 330 0.88 4 11 3.8e-06 0.00026 21.8 0.9 1 23 337 359 337 359 0.98 5 11 0.00025 0.017 16.1 0.1 3 21 367 385 365 386 0.94 6 11 4.6 3.2e+02 2.6 0.9 14 23 388 397 386 397 0.85 7 11 0.00025 0.017 16.1 0.1 3 21 405 423 403 424 0.94 8 11 4.6 3.2e+02 2.6 0.9 14 23 426 435 424 435 0.85 9 11 0.00025 0.017 16.1 0.1 3 21 443 461 441 462 0.94 10 11 4.6 3.2e+02 2.6 0.9 14 23 464 473 462 473 0.85 11 11 0.00044 0.03 15.3 0.1 3 20 481 498 479 499 0.95
Sequence Information
- Coding Sequence
- ATGGCTAAAGATTTGAAAACGTCGCCCCCCGTCCAGCACCCGTGCCTCACCTGTCTCTCCGAGGGCCCCACGAACCGTGTAGAAAGCGAGGGTAGCGCAACCCGACACGCTCTTCAACTTATTTTTCCTTCTCAGGAGCTGCATGACTATGACTGGGTGTGCAGCTGGTGCCACCTGGCCCTGAGGAAGCTGGAGACCTTCCACCGGCAGGCCCTGCAGGCGCGCTCCCTGCTCACCTCACATGCCAAGCTCACCAGCAAGGAGACAGAAAGCCTGTTTCCCAAAAGTTCTGTGTTAGCAGAAGTGAGGAGATGTCAGCTGGTGACTAGCAACACCTTGCTGCTGCACCTGGAGGCCTCGGGGGAGTGCAAGGAGGAGCCTGAGGGCGGAGAAGCCTGCGTCTCCTCTGTCCTCACACACACCACCCCACAGGCTTTCCTGGCTGAAGAGATTGACTGCAAAGATGTGAAGGAGGAGTACAACTCTGATGGTGACCAGGAGTTTGATGCTTATGACGACCTGCCCCTCTCCGCCTCCGCAGCGGCTGCTCCTCGCCTGAGGCATAAGCACAAGCATGACAGggccaagaagaagaagagctcCAAGAAGAAGAAAGTCCAGGTGGAGGGCGGGAAGTTCAACAGCAGGATGGTGCTGGAGACAGCGCAGTACAAGGTGATAAAGCTGAGCCACGAGGAGATAGTGCGGCAGCTGCAGGAGGCGGGCCAGGCAGAGCGCTACATCAAGGCGCCCTACAAGTGCGCGCTGTGCGTCAAGGGGTTCAACTATGAAGACGTGCTGAGGAACCACATGGCCAAGCATCAGCCGGAGCCGGGCTACTTGGAGTGCGGGCTGTGCCACCAGTTCCTCGCCTCCGCCGTGTCCATGCGCGGCCACCTCAAGTCCCACAGCACCAAGTACCAGTGCAAGGAGTGTGGCTGCGTCAAGGCCTCGCGTCAGCACCTGCTGGAGCACTACGGGCTGCTGCACCAGGAGGCGCCACACATCTACATCTGCAACATCTGCGGCAAGACTCTGGTCAAGCGCACCATGTACCAGAAGCACATGCGCGTGCACTGCCCGCCCACAGAGGTGGCGTGCGACAAGTGCGGCAAGCTGTTCAAGACCATCGAGACCCTGAGGGCGCACAtgctCAAGCGCACCATGTACCAGAAGCACATGCGCGTGCACTGCCCGCCCACAGAGGTGGCGTGCGACAAGTGCGGCAAGCTGTTCAAGACCATCGAGACCCTGAGGGCGCACAtgctCAAGCGCACCATGTACCAGAAGCACATGCGCGTGCACTGCCCGCCCACAGAGGTGGCGTGCGACAAGTGCGGCAAGCTGTTCAAGACCATCGAGACCCTGAGGGCGCACAtgctCAAGCGCACCATGTACCAGAAGCACATGCGCGTGCACTGCCCGCCCACAGAGGTGGCGTGCGACAAGTGCGGCAAGCTGTTCAAGACCATCGAGACCCTGAGGGCGCACATgctgtga
- Protein Sequence
- MAKDLKTSPPVQHPCLTCLSEGPTNRVESEGSATRHALQLIFPSQELHDYDWVCSWCHLALRKLETFHRQALQARSLLTSHAKLTSKETESLFPKSSVLAEVRRCQLVTSNTLLLHLEASGECKEEPEGGEACVSSVLTHTTPQAFLAEEIDCKDVKEEYNSDGDQEFDAYDDLPLSASAAAAPRLRHKHKHDRAKKKKSSKKKKVQVEGGKFNSRMVLETAQYKVIKLSHEEIVRQLQEAGQAERYIKAPYKCALCVKGFNYEDVLRNHMAKHQPEPGYLECGLCHQFLASAVSMRGHLKSHSTKYQCKECGCVKASRQHLLEHYGLLHQEAPHIYICNICGKTLVKRTMYQKHMRVHCPPTEVACDKCGKLFKTIETLRAHMLKRTMYQKHMRVHCPPTEVACDKCGKLFKTIETLRAHMLKRTMYQKHMRVHCPPTEVACDKCGKLFKTIETLRAHMLKRTMYQKHMRVHCPPTEVACDKCGKLFKTIETLRAHML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -