Afus010349.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637343.1:2644026-2648143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.081 5.5 8.2 5.4 1 23 28 50 28 50 0.95 2 23 0.02 1.4 10.0 3.3 1 23 56 78 56 78 0.97 3 23 0.7 48 5.2 8.3 1 23 84 106 84 106 0.98 4 23 0.012 0.84 10.7 3.1 1 23 112 134 112 134 0.98 5 23 0.023 1.5 9.9 0.4 1 23 140 162 140 162 0.95 6 23 0.0003 0.02 15.8 2.1 1 23 168 190 168 190 0.97 7 23 0.5 34 5.7 1.2 3 23 212 232 211 232 0.97 8 23 0.05 3.4 8.8 0.4 1 23 238 260 238 260 0.98 9 23 0.00025 0.017 16.0 1.4 2 23 267 288 266 288 0.97 10 23 0.00094 0.064 14.2 1.2 1 23 294 316 294 316 0.98 11 23 0.01 0.7 11.0 4.9 1 23 322 344 322 344 0.98 12 23 0.0012 0.081 13.9 0.8 1 23 374 396 374 396 0.93 13 23 0.39 27 6.0 2.5 1 23 401 423 401 423 0.98 14 23 0.087 5.9 8.0 3.0 1 23 622 644 622 644 0.95 15 23 0.041 2.8 9.1 3.5 1 23 650 672 650 672 0.97 16 23 0.7 48 5.2 8.3 1 23 678 700 678 700 0.98 17 23 0.049 3.3 8.8 1.0 1 23 706 728 706 728 0.98 18 23 0.00081 0.055 14.4 1.6 1 23 734 756 734 756 0.95 19 23 0.00061 0.041 14.8 1.5 1 23 762 784 762 784 0.95 20 23 0.18 12 7.1 4.2 1 23 802 824 802 824 0.96 21 23 0.0014 0.097 13.7 1.0 1 23 830 852 830 852 0.99 22 23 0.016 1.1 10.4 1.8 2 23 859 880 858 880 0.97 23 23 0.082 5.5 8.1 2.8 1 23 886 908 886 908 0.96
Sequence Information
- Coding Sequence
- ATGGAGGATGTAAAGGTTGCTGAAGTAAATGAAGAGAAGCCCATGATGTATTTAGAATACACAAGAGCTACTCCACGGATATTTCTATGCGACAAGTGCTCTTACCAAACCTGCAGATACAAGAACTTCCAGAGCCACATGCTATCACACGAAGGGCACTTGCCTTTTGCCTGCACTGAGTGCGACTACAAAACTGCTTTCTACAACCACCTAAACATGCACAAGCGATCTCACGCCGGGAAGTACATCTACCACTGCAAGATCTGCACCTTCTGCAGTCCTTCCACTGGATGCTTAAAGACACACATGTACACCCACTCAGGAGAAAAACCATTCAGCTGTGATTTGTGCGACTACAGATGCACCTCaattgaaaatatcaaaaagcATAAGCTCACCCATTTCCCTGACAGAccatttgcctgtgatcagtgtCCCTACACGTGCAAGACTATAGGAGGACTAAAGATACACTCAGAAGTGCACATAGAACTGAAACCTTTTGCTTGTGATAAATGtgacaaaaaatttaaaaccgTGAACCGCTTGAGATATCATCAGCGAGCTCACGAAGACAGTAACCCGTCGGATCTTTTTAAAAAGATTCCCAAGCCCGAGACAAAACTGCGTTTCTGTAACTTCTGTGACTTTTCTACTTTGTACAAAGCGTCGCTATTTGTTCACCAGCGACTTCATAATGGTTTCAAACGTTTCAAATGTGAATTGTGTGATTTCTCAGCCTTGAAAAATTCAAGTGTAACAGTCCACATGAGGATTCACACGGGAGAGAAGCATCTCTCTTGCACTTACTGCGAATACAAAACTGGCAATTCGGAATCATTGAAAACGCACATGAGAAGACACACGGGGGAAAGGCCGTTCAGCTGTGACCAGTGCAGCCGCTCCTTCATAACCACCTCTGGAATGAACAGTCACAGGCTGTCACACAACTCAGATAATAAGTTCTCTTGTGATCTGTGTGATTACAAGTGTAATTTCAAAACTTCTTTAAGAACTCACATAACAAGGCATGTGGATAGAGGAGAAGACCATCTTAACAAGCCGAGCAAACGTGAAAAAACCGGGACAGGTTATGTGTACATGAAAAGAAAGAAGACATTTATATGTCGTCCTTgcaagaaatcatttaaaaacgCACAAGAATTGAATGCTCACAAAGACACGCATCCTGCGAAAGCATTTTATTGCGACAATTGCAAATATCAAAGCGCCGACAGAAAGCTTTTAGTGTGTCACATGAGAATACATGACAAAAATTATGAAGACAGAAAGAGAACTAGAAACCGCCGTCTTAAAGAAAAAACCAGCGAGAAGTTTGTACGAATGAAAGTGTTGAATGATATTGTGAAAGTTAAAAAAGGGAAGCACAAGAAATCAAAGACGAAAGATGGAAAAGTGTCACTCAAGAGTAAGCGAAGTAAAGTGGAATTGTACTCTGAAATAACAATCAAAGAAGAAGTAGATGACGATGATAGCAATGACATGACTGATGCGTTGAGTGATACGGTCGCAGAACCTCTGATGACCAGCGAGGCGTTCTTGGCCATGGTTAAGGGAATGCCGGCAGAGGTGAAAGAAGAACCGGTGGCTGAGTGTGAAGTCAAAAAAGAAGAACCGGAAGTTGACCCCGCTAAAATTCCACCACCTGAGGAGGTTCCTAAAGCTCCACTGGaagaaacaacaaaattagaggATGGTATTGACAATGATGATGTATTTAAAGATGAAtacaatgatgatgattttgattGGCCAATACCAGCCCCTGTACCAGtgactacaattaaaaaagaagaaccaTTTTACCTGAATAATGACACCAGCCGAGCTACGCCACGGTTATATCTATGTGAAAAGTGCTCTTACCAATCCTTCAGATACAAGAACTTCCAGAGCCACATGCTATCACACGAAGGGCACTTGCCTTTTGCCTGCACTGAGTGCGACTACAAAACTGCTTTCTTTAACCACCTAAACATGCACAAGAGATCTCACGCCGGGAAGTACATCTACCACTGCAAGATCTGCACCTTCTGCAGTCCTTCCACTGGATGCTTAAAGACACACATGTACACCCACTCAGGAGAAAAGCCATTCACCTGTGATTTGTGCGACTACAGATCTACACTGatagaaaatgtgaaaaagcaTAAGCTCACCCATTTCCCTGAGAGgccgtttgcttgtgatcagtgtgattacacgTGCAAGACCAAAGGCAGCTTAAAGATACATTCAGAAGTGCATATTGAATTGAAAAACTTTGCTTGTGATAAATGTGACAAGACGTTTAAAACTGTGAACCGCTTGAGATATCATCAGAGCGCTCACGAAGACAATTCCTCTCGTCCCGTTTACAAAAGAAACCCCAAAAAGAAGTTGCATTTCTGCAAAGTGTGCAACTTTTCAACGTTTTACAGGGCGTCGCTGTTTGTTCACAGGAGACTTCACAATGGTTTCAAGCGTTTCAAATGCAAGTTGTGTAAGTTCACAGCCATAAAGAACTCCAGTGTCACGGCGCACATGAGGATCCACACAGGAGAGAGGCACATCTCGTGTCCTCACTGCGACTACAAAACTGGGTTCACAGAATCAATGAGATCACATCTGAGAACACACACGGGCGAGAAGCCTTTTGCATGTGACAAATGTGAGTTTACGTGCAAGACCATTGGTGCTTTGACAAATCATAAGTACAAGCACAACCCCGACAAGAAACTGTCCTGTGACTTGTGCACGTATCGGTGTCATGTCAAATTGCATATGAGATATCACATGAAAACCCACGGTTTTAAGTGA
- Protein Sequence
- MEDVKVAEVNEEKPMMYLEYTRATPRIFLCDKCSYQTCRYKNFQSHMLSHEGHLPFACTECDYKTAFYNHLNMHKRSHAGKYIYHCKICTFCSPSTGCLKTHMYTHSGEKPFSCDLCDYRCTSIENIKKHKLTHFPDRPFACDQCPYTCKTIGGLKIHSEVHIELKPFACDKCDKKFKTVNRLRYHQRAHEDSNPSDLFKKIPKPETKLRFCNFCDFSTLYKASLFVHQRLHNGFKRFKCELCDFSALKNSSVTVHMRIHTGEKHLSCTYCEYKTGNSESLKTHMRRHTGERPFSCDQCSRSFITTSGMNSHRLSHNSDNKFSCDLCDYKCNFKTSLRTHITRHVDRGEDHLNKPSKREKTGTGYVYMKRKKTFICRPCKKSFKNAQELNAHKDTHPAKAFYCDNCKYQSADRKLLVCHMRIHDKNYEDRKRTRNRRLKEKTSEKFVRMKVLNDIVKVKKGKHKKSKTKDGKVSLKSKRSKVELYSEITIKEEVDDDDSNDMTDALSDTVAEPLMTSEAFLAMVKGMPAEVKEEPVAECEVKKEEPEVDPAKIPPPEEVPKAPLEETTKLEDGIDNDDVFKDEYNDDDFDWPIPAPVPVTTIKKEEPFYLNNDTSRATPRLYLCEKCSYQSFRYKNFQSHMLSHEGHLPFACTECDYKTAFFNHLNMHKRSHAGKYIYHCKICTFCSPSTGCLKTHMYTHSGEKPFTCDLCDYRSTLIENVKKHKLTHFPERPFACDQCDYTCKTKGSLKIHSEVHIELKNFACDKCDKTFKTVNRLRYHQSAHEDNSSRPVYKRNPKKKLHFCKVCNFSTFYRASLFVHRRLHNGFKRFKCKLCKFTAIKNSSVTAHMRIHTGERHISCPHCDYKTGFTESMRSHLRTHTGEKPFACDKCEFTCKTIGALTNHKYKHNPDKKLSCDLCTYRCHVKLHMRYHMKTHGFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -