Afus016723.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- ZNF516
- Assembly
- GCA_951799405.1
- Location
- OX637352.1:12048077-12051119[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00023 0.016 16.1 1.0 1 23 165 187 165 187 0.98 2 11 2.4e-05 0.0017 19.2 5.6 1 23 193 215 193 215 0.97 3 11 0.0002 0.014 16.4 2.4 3 23 223 243 221 243 0.95 4 11 0.17 11 7.2 6.7 1 21 249 269 249 272 0.93 5 11 1.5e-06 0.0001 23.0 1.1 2 23 280 301 280 301 0.98 6 11 1.6e-05 0.0011 19.8 3.1 1 23 307 329 307 329 0.98 7 11 0.13 9 7.5 1.7 1 23 338 363 338 363 0.95 8 11 0.00076 0.052 14.5 0.5 1 23 369 391 369 391 0.97 9 11 7.2e-05 0.0049 17.7 2.4 2 23 398 419 398 419 0.98 10 11 0.094 6.4 7.9 2.2 1 23 425 448 425 448 0.94 11 11 0.0017 0.11 13.5 5.0 1 23 453 475 453 475 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGATTGCGCAGACGACGCCCAGCAAGATTTGCCGGGCATGTCTGCAGACGGAACCGCCATTTTTGGAGTTGCACGAATTCAGCGAAGTTGTGAACGACGTCCAAGTGTGCATACGAGAAATGCTGATGTCTATTGCGTTTATTCAGATAAACGTTGGAGATGGCCTGCCGGAAGACATCTGCTTCAACTGCGCAAAAAAAGTCAGCCTTGCGTACAACTTCAAGATCCTCTGCGAACGTTCCGACGCCATGCTGCGTCAGGCAGGCGCTGCATTCACCGAGCAATACATCAAGTTGGAGGGAAACCTCCACGAGGAGATGCAAGCCGCCAACATCCTTCTGGTCCCCTCCACTTCCATGGACAAAATAGTCTCCGACAGCTATCAACCTATCATCATAACCCCTGACATCTACacaaaatcaattaaaataacCAAAACGATCCAGCCAAAGGTATCCCTACAAGTTATTGATACACAACAGTGTTTTACATGTACAGTATGTCTGCAAAGCTTCCCCGAGCGTGATTCGCTACGTGAACACAAAAAGACGCACACATCGGAGATGCGACACCCTTGCAAAGTCTGCGGGAAATCATTCTCTAGAGTTTCCTTTTTACATCACCACATGGTAACACATACAGAACACAGAAACCACCTTTGTCCGGTTTGCGGAAAACGGTTTCATTTAGCGTCCGGTTTGCGGCAACACTTGAAATATCACAGCGGAGTTAAGGATCACGCTTGCCACATGTGCGAAAAGAGATATTACAATTTACACTTGTTGAGGGAGCATGTGAGGTGCACGCATTCGAATAACAGGTACAACAATACTTGTTCCGTTTGCGGGAAAAAGTTTACAGCGAAATCGTCGCTTACGATGCACATGAAGATTCACACGGGCGAGAGGCCGCACGTTTGCAGCGTGTGCAGTAAGCGGTTCACGCGCGGAATCTATTTGAGGACGCACATGCGCACGCACACGCAAGATCCACCCGAAAAACTTTACCCGTGTCCGCACGAGAGTTGTGACAGAAAGTTTCTAGCCAAAGCATCGTTGCAAATTCATATTCGACATAAGCATACATTGGAACGGCCGTACGCTTGTAAACTATGCCCGAAAGCCTTCTCTTCTGTTCAAGGTTTACATGAACATAGAACTGtgcatacaaaagaaaaacctGAAAAGTGTTCAACATGTAATAATGGTTTTGTTAATAAGCAGTCGTTAAAGAAGCACATGCGCTTGCACACTGGAGAGAGACCTTATCCGTGTCCCCATTGCAAGGAAAGGTTCCTCTCGAGCTCCAGAAGGAACGAGCATGTGCAAACTAAGCATATGGAGCGTAAACACGAGTGCAGTCTGTGTCCCAAAAGATTTCATCTGAAGCGGACCTTGAATGGGCACATGAAGACACACTCAGCGCCTAAAAAGAAAAGCAAAGAGGTCACAACGCTTGACATTAATCCAGCCAATATGGAAGTTGCTAGTTTTGAAgtTAGTTACATTGAAAATTATGGTGACACCAAGTTTGGCTCCACCATGGGCGTGGGGAGGGATTTTGAGATGCTGCTGGTCTCAATTATATTCCGCGTTTGA
- Protein Sequence
- MDLIAQTTPSKICRACLQTEPPFLELHEFSEVVNDVQVCIREMLMSIAFIQINVGDGLPEDICFNCAKKVSLAYNFKILCERSDAMLRQAGAAFTEQYIKLEGNLHEEMQAANILLVPSTSMDKIVSDSYQPIIITPDIYTKSIKITKTIQPKVSLQVIDTQQCFTCTVCLQSFPERDSLREHKKTHTSEMRHPCKVCGKSFSRVSFLHHHMVTHTEHRNHLCPVCGKRFHLASGLRQHLKYHSGVKDHACHMCEKRYYNLHLLREHVRCTHSNNRYNNTCSVCGKKFTAKSSLTMHMKIHTGERPHVCSVCSKRFTRGIYLRTHMRTHTQDPPEKLYPCPHESCDRKFLAKASLQIHIRHKHTLERPYACKLCPKAFSSVQGLHEHRTVHTKEKPEKCSTCNNGFVNKQSLKKHMRLHTGERPYPCPHCKERFLSSSRRNEHVQTKHMERKHECSLCPKRFHLKRTLNGHMKTHSAPKKKSKEVTTLDINPANMEVASFEVSYIENYGDTKFGSTMGVGRDFEMLLVSIIFRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -