Basic Information

Insect: Agapetus fuscipes
Gene Symbol: -
Assembly: GCA_951799405.1
Location: OX637339.1:12439281-12448171[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.044 3 9.0 1.2 1 23 244 266 244 266 0.97

2 10 0.00018 0.013 16.5 0.2 2 23 273 294 272 294 0.98

3 10 0.0011 0.078 14.0 0.0 1 23 300 322 300 322 0.98

4 10 1.5e-06 0.0001 23.0 0.6 1 23 328 350 328 350 0.98

5 10 0.51 34 5.6 0.5 6 23 399 416 399 416 0.98

6 10 8.8e-06 0.0006 20.6 0.9 1 23 423 445 423 445 0.96

7 10 0.00019 0.013 16.4 0.9 3 23 453 473 451 473 0.97

8 10 3.4e-05 0.0023 18.8 1.4 1 23 479 501 479 501 0.98

9 10 1e-05 0.00069 20.4 0.6 1 23 507 529 507 529 0.95

10 10 0.00012 0.0084 17.0 1.2 2 23 536 558 535 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.044	3	9.0	1.2	1	23	244	266	244	266	0.97
2	10	0.00018	0.013	16.5	0.2	2	23	273	294	272	294	0.98
3	10	0.0011	0.078	14.0	0.0	1	23	300	322	300	322	0.98
4	10	1.5e-06	0.0001	23.0	0.6	1	23	328	350	328	350	0.98
5	10	0.51	34	5.6	0.5	6	23	399	416	399	416	0.98
6	10	8.8e-06	0.0006	20.6	0.9	1	23	423	445	423	445	0.96
7	10	0.00019	0.013	16.4	0.9	3	23	453	473	451	473	0.97
8	10	3.4e-05	0.0023	18.8	1.4	1	23	479	501	479	501	0.98
9	10	1e-05	0.00069	20.4	0.6	1	23	507	529	507	529	0.95
10	10	0.00012	0.0084	17.0	1.2	2	23	536	558	535	558	0.96

Sequence Information

Coding Sequence: ATGGAGCAGCTGGAGATGTTTGAAAAGATGTGCAGATCTTGCTTGGAGAATCTGGGCTGCATATCCATTTTTAACAAGGAGAATAACGTACCGTTTTCAGAAATGCTCTTAGCTTGCGCGTCCATCACAGTGCTAGCAGGAGAGCAGAGCCCCCAGCAGTTGTGTGACGTGTGTGTGTGCAGACTAAGGGATGCATTCACGTTTAGAAACCAATGTCAGCGCAGTGAAGCGCGCTTGAAGGATCTACAAAATATCAAAACAGACAACAAGCCTGAATTGTTCATGGACGAATCCATAGATCTGAGCGATGACTGGGTCCCCTTCACTGGTGATTTGTATGACGATGACGCCCCACTAAAGACGCCCAAGGCGGCCACCAACTACGACACTGACCACAACCCCCTCAGTGTGTGCAACGTGACAGTCACGCAGagcaagaagaggaagaagagggAGGGCAAGGCCAAAAGGAAGGTGAAGAAAGAGAAGAGCAAGAACGGAGGGGAGGGGGAGCTGAAGAAGGTGTTTAAGGTTGAGGTGTTGGATTGCGGCTTTGACGATAAGAAAGATAACATATCCCTTAGTAAATTAAAGAAATTGTCCAGTCGCAAGAGCTCCAAGAAGGCAATGGAAGTCAGTACAAAGAAGGAGGCACCTCAGCAGAGCACCTCCACTGAGATCAAAGAAGAGATTCAGAAGAAACCTCCTGACAAGAGCATTGAGCGTCAGTACTTCTGTGACATATGTGGCTACTGCGCTCCAGAGAAGTGGGTCCTGGTCCAGCACATGTGCAACCATACGGGGGAGAAGCCCAACAAGTGTGACATCTGCGGGAAGGGCTATGCGTCTATATCAGGTCTCCGTCTGCACAAGAAGTCGCACTCGTCTGTGAAGTCATTTGTGTGCGCGGAGTGTGGCAAGGGACTGGGCAGCAAGGTGGCCCTGGCCGCCCACCACCGCCTCCACACGGGGGAGATGCCCTTCTCCTGCACCGTGTGTGGCAAGGTGTTCCGAGCGCTGTCCAACCTGCGCACCCACAGCCGCATACACTCCACTGGCAAAAGAAAACACGCCTGCGAGGAAGGTGTTCCAAGCGCTGTCGTACCTGCGCACCCACAGCCGCATACACTCCACTGGCAAAAGAAAACACGCCTGCGAGGTAAAATATTAACACTGTACTTCTCCTGGATCGCGTGCAGGAAGGTGTTCCAAGCGCTGTCGTACCTGCGCACCCACAGCCGCATACACTCCACTGGCAAAAGAAAACACGCCTGCGAGGTGTGTGGGAAGCTGTGCTACACACCCTCTGAGCTGGCGGTGCACATGCGCACGCACACGGGCGAGCAGCCATACGGGTGCTCCATCTGCCTCAAGAGGTTCCGCTACAGGTTCAACTATATAGTGCACATGAAGATACACGCGGGAAAGAAGGACTTCCCCTGCCCGCACTGCCCTAAACTCTTCACCACAGCTGAGCTGCGTCGCCGGCACGTCAGGCGTCACACGGGAGAGAAGATTTACGCTTGCACGGACTGTGACAAGAGGTTCACAACTCAGTCAGCTCTGGGCAGCCACAGGATCTTCCACACCAAGACCAAGGACTCGGTGTGCGACATGTGCAATCAGAGGTTCACATATCCATCGAGTCTGTACGCccacaagaagaagaagcacaACTATGTGGCGAACCCTCGCATCACCGACGCCTGTCCCCTCAACACTCCCAAGATACAGAACCTCATCAATACATGGAGTCTGTACGCCCACGAGAAGAAGAAGCACAACTATGTGGTGAACCCTCGCATCACCGACGCCTGTCCCCTCAACACTCCCAAGATACAGAACCTCATGTAG
Protein Sequence: MEQLEMFEKMCRSCLENLGCISIFNKENNVPFSEMLLACASITVLAGEQSPQQLCDVCVCRLRDAFTFRNQCQRSEARLKDLQNIKTDNKPELFMDESIDLSDDWVPFTGDLYDDDAPLKTPKAATNYDTDHNPLSVCNVTVTQSKKRKKREGKAKRKVKKEKSKNGGEGELKKVFKVEVLDCGFDDKKDNISLSKLKKLSSRKSSKKAMEVSTKKEAPQQSTSTEIKEEIQKKPPDKSIERQYFCDICGYCAPEKWVLVQHMCNHTGEKPNKCDICGKGYASISGLRLHKKSHSSVKSFVCAECGKGLGSKVALAAHHRLHTGEMPFSCTVCGKVFRALSNLRTHSRIHSTGKRKHACEEGVPSAVVPAHPQPHTLHWQKKTRLRGKILTLYFSWIACRKVFQALSYLRTHSRIHSTGKRKHACEVCGKLCYTPSELAVHMRTHTGEQPYGCSICLKRFRYRFNYIVHMKIHAGKKDFPCPHCPKLFTTAELRRRHVRRHTGEKIYACTDCDKRFTTQSALGSHRIFHTKTKDSVCDMCNQRFTYPSSLYAHKKKKHNYVANPRITDACPLNTPKIQNLINTWSLYAHEKKKHNYVVNPRITDACPLNTPKIQNLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -