Afus004659.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- L
- Assembly
- GCA_951799405.1
- Location
- OX637335.1:21957890-21963055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-05 0.0014 19.4 0.2 1 23 10 32 10 32 0.98 2 19 0.3 21 6.3 0.1 2 23 92 115 91 115 0.91 3 19 0.0055 0.37 11.8 1.3 1 23 124 147 124 147 0.95 4 19 0.13 8.6 7.5 0.0 3 23 210 230 209 230 0.98 5 19 0.003 0.21 12.6 0.0 3 23 246 266 244 266 0.91 6 19 0.00031 0.021 15.7 0.1 1 23 274 297 274 297 0.94 7 19 0.043 2.9 9.0 0.1 1 23 302 325 302 325 0.92 8 19 5.8e-05 0.0039 18.0 1.4 1 23 399 421 399 422 0.96 9 19 3.3 2.2e+02 3.1 0.3 3 23 461 483 460 484 0.83 10 19 0.0018 0.12 13.3 2.4 2 23 497 518 496 518 0.96 11 19 0.018 1.2 10.2 0.1 1 23 528 550 528 550 0.96 12 19 0.27 18 6.5 1.4 2 23 558 579 558 579 0.95 13 19 1.1 72 4.6 0.2 1 13 632 644 632 645 0.91 14 19 0.0007 0.048 14.6 0.2 2 23 680 702 680 702 0.96 15 19 0.13 8.6 7.5 0.1 1 23 706 728 706 728 0.97 16 19 0.085 5.8 8.1 0.1 2 23 736 757 735 757 0.95 17 19 0.0022 0.15 13.1 0.1 1 23 765 787 765 787 0.97 18 19 0.84 57 5.0 1.8 1 23 794 816 794 816 0.96 19 19 0.0042 0.29 12.2 1.8 1 23 873 895 873 895 0.98
Sequence Information
- Coding Sequence
- ATGAAGACGCACGACAACCAGAAGCCCTTCCAGTGCACGGTGTGTAACCGCGGGTACAACACGGCGGCCGCTCTGACGTCACACATGCAGAACCACAAGCGCGGGGAGACGGGGGCGCACACTCCCACCCCGCACACCAGGCACCACAGATACAGGAGAGCAGACATGCTGCAGAATCATATAAGCGGAGAGGCATCAACAGGCAGCAGTCCATCAGGCGCAGGCGCTACACCAGGAGTGGTCAGCTCTCCTTCACCGCGACCTCCCCGACTCTCATGTCCGTACTGCTCGCGGGAAGCCTTCACCAGCCTGGAGAGACTGCAGGCGCACGTGCAAGCAACCCACGCAGACCTGGCGCCCAAACCCAAACACCCGTGTCTCATGTGTACCATGACCTTCCCGACCAGTCCGTCCCTGCACCAGCACATCTCCATCTCGCATCCAACCAAGCAGAGCCCAATCAGCTCCCCGCCAAATACATCCAACCCTCCATCCTTCCATCCAGACCAATTCCTCCTAACCCCAACAGAAGAACAAATACGACCAACTGATCTAAGCAAGAAAACAAACCCACTCAAGAGACCCAGATCAATAGAGAGCAGCGCAATCAACGCAAACACGTTGCTTTGCAATCAATGCGGAGCCGCCTTGCCAGATTTTGAAGCGTTTCGTGTGCATCTTCGTGCGCACTTGGACGGCAGCGCTCTAACTCCGAGTGCAGCGTCTGGTCTTGCTTGTATGACTTGCGGTGCGCGCTTTAGCAGTCCTGGTGCCCTGGAGCGGCATGCGGCTGCGCATCTCTTGGCTCTGGGGGCGCAGTATGCGTGTCCCAGCTGTGCGAGGACGTTCCCCAAGCCGGATGAGCTGCAGAAGCATCTGATGGATCTGCATGCGCATCATCTGTACCGCTGCGCCATCTGCAAGGAGATATTTGATTCCAAAGTGGCAATTCAGGTGCACTTTGCCGTGAAGCACAGCCACGAGTGCAAGGTGTACCGCTGCACGGGCTGCCCCTCTCCACCCCCCGCCTTCCTCACCGAGGGCGAGTTCTCCCAGCACGTGCGCACGCAGCACGCGGGGCTGGTGGCGCCCCCTGCCCCGCCCCCGCCGCCCGCTCTGCGCTGCCTGTTCTGCCGCCATGCCTGCGCCAGCGAGCTGGAGATGCAGTTCCACCTGGCCGCCCATGCGGAGCACTACAGGTGCCCCGTATGTGGGGAGGCCTTCCACGTGGAGTTCCTGCTGGACAGGCACATGCAGACGCATCATGCTCCTCGGAGCATCAACGGTGACAGCCCAAAACTAAAACAGATCCCTACTGGCAGAATCAGTGTGAAAACATTACCAACAGAGAATAACAACACCAAGAAGGAAGCCAACAACTGTGACATCTGCGACAGAGGAGACTTCCAGTCAGAGAGCGAGTTGGCAGCGCATCGCAAGCTGGCGCATCACGTCAAGGCACCGAGCAAGAACGGGGCCGTGAGCCTGAACTGCGCTTACTGCAGCGAGAACTGCAAGTCCAGGACAGAGCTGGAGAACCACATGAAGAGCCACTCGCAGGGAGCAGCCACGGGCGGGAAACACAAGTGCCTCATATGTGATGAAGTCTTCCCGTCTGCAGCTATCCTGGCCGAACACAAACTGACACATTGTAAAGTAGTCGCAGGAAACAGCTGCACACATTGCAAAACTGCGCTAGCATCTGAAGAACAATTCTTTATTCATCTATCTCAACATTCCAACAATAACAATTCCCCAGGAAGTCCTCATCCGTCATCTCCAGTCGCCTTACCGACTCCTTGCGTAGTGTGTCGGCAGACTTTAGTGTCAGATTTGGAAGCGAGGATCCATGCAAGGTTCCATCTGAAAAACTCGGGGGTTGCAGCTGAAAGCTATCAATGTGCCCTGTGCTTAAAGTCATTTGACCAAAAGGATGTCATTCCAACTGGGGGCGAAAGAAATAACGGAATCCCAACAACACATGTCTGCAAAGAATGCTATAGGCACCATAGTGGGACAGCTCAGCAGTCAGAACGTAGATGCACAGAATGTCATCTTAAGTTTGAATCCCCTGCAGCGCTAGAGAGCCACATTGAAGTTGTGCATAGGAAGACTTACACTTGCATAGAATGCCAGGCGGCTTTTGAGTCTGAACAGGAAGTGCGTGCACATGTAAGGAGTCATGTTGTGAGTGGGGGAGCACTAGAATGCAGGTTATGTCGCAGGTCTCTGGGTTCTCCTATGCAGCTACAAGCTCATCTGATAGAGCATACGTTTGCTGGGTGTGGAGGCTTCACCTGTTACCTTTGTTCTGCCGTCTTCACCGCAGCCGCTTCCCTCCAGCAGCATATGTTGGCACACGGTCTCAATGCGCGTCCATACGACTGCTCTAGATGTTCATTAAAGTTTTTCTTCCGAGCAGAACTAGACAATCACAGCTACACACATCTAGAAGACGACGTGAGAATCAAACTGAGCGAGACAAGCGAGAGCATCAAAAACAACTATTTGCTGCATCAAAATGGTTTCCATGATACTCTAAGCTTTTACAATGCAGCGATTGAATCCGTCAACAATAGCAAGAAGATGAAAGCGTCCACAAGTCCTCCAGGTGTGTTTAAATGTTCGGAATGTCCAGAAGAATTCACCAACATGCTGGGGCTTCATTCGCATAAGCGGCAACATGAAAGTACTGAAGAGCAGATGGTCAAGCAAGAAAATGTCTCGGTGAAGCAAGAAGTGGACGAAAAAGATGAATACATTGAAGTCGCCTCGCCGACTGCAAAAGATGTCCTGGGAAAAACAAATGGCGACGTTTCAAATAAAGATATTGGTTCTAGCGAGACAACAACGCCCCCGTTGTTACATCCTAAGGAAGAAGTTGTAGAAAATTAG
- Protein Sequence
- MKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRGETGAHTPTPHTRHHRYRRADMLQNHISGEASTGSSPSGAGATPGVVSSPSPRPPRLSCPYCSREAFTSLERLQAHVQATHADLAPKPKHPCLMCTMTFPTSPSLHQHISISHPTKQSPISSPPNTSNPPSFHPDQFLLTPTEEQIRPTDLSKKTNPLKRPRSIESSAINANTLLCNQCGAALPDFEAFRVHLRAHLDGSALTPSAASGLACMTCGARFSSPGALERHAAAHLLALGAQYACPSCARTFPKPDELQKHLMDLHAHHLYRCAICKEIFDSKVAIQVHFAVKHSHECKVYRCTGCPSPPPAFLTEGEFSQHVRTQHAGLVAPPAPPPPPALRCLFCRHACASELEMQFHLAAHAEHYRCPVCGEAFHVEFLLDRHMQTHHAPRSINGDSPKLKQIPTGRISVKTLPTENNNTKKEANNCDICDRGDFQSESELAAHRKLAHHVKAPSKNGAVSLNCAYCSENCKSRTELENHMKSHSQGAATGGKHKCLICDEVFPSAAILAEHKLTHCKVVAGNSCTHCKTALASEEQFFIHLSQHSNNNNSPGSPHPSSPVALPTPCVVCRQTLVSDLEARIHARFHLKNSGVAAESYQCALCLKSFDQKDVIPTGGERNNGIPTTHVCKECYRHHSGTAQQSERRCTECHLKFESPAALESHIEVVHRKTYTCIECQAAFESEQEVRAHVRSHVVSGGALECRLCRRSLGSPMQLQAHLIEHTFAGCGGFTCYLCSAVFTAAASLQQHMLAHGLNARPYDCSRCSLKFFFRAELDNHSYTHLEDDVRIKLSETSESIKNNYLLHQNGFHDTLSFYNAAIESVNNSKKMKASTSPPGVFKCSECPEEFTNMLGLHSHKRQHESTEEQMVKQENVSVKQEVDEKDEYIEVASPTAKDVLGKTNGDVSNKDIGSSETTTPPLLHPKEEVVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -