Afus005575.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637336.1:21224208-21252040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.1 1.4e+02 3.7 0.2 1 15 344 358 344 358 0.87 2 22 1.8 1.2e+02 3.9 0.0 10 23 387 400 385 400 0.91 3 22 1.8 1.2e+02 3.9 1.5 2 23 417 438 416 438 0.91 4 22 0.0063 0.43 11.6 1.9 3 23 447 467 445 467 0.97 5 22 0.00079 0.053 14.5 4.5 1 23 473 495 473 495 0.98 6 22 7.3e-05 0.005 17.7 3.1 1 23 504 526 504 526 0.98 7 22 0.12 7.9 7.7 2.4 2 23 533 560 532 560 0.88 8 22 0.12 7.9 7.7 2.4 2 23 567 594 566 594 0.88 9 22 0.29 20 6.4 3.7 2 23 601 628 600 628 0.87 10 22 3.3e-06 0.00023 21.9 0.1 2 23 635 656 634 656 0.97 11 22 2.1e-06 0.00014 22.6 3.0 1 23 662 684 662 684 0.99 12 22 1e-06 6.9e-05 23.6 0.1 1 23 690 712 690 712 0.98 13 22 0.025 1.7 9.8 0.5 9 23 717 731 715 731 0.96 14 22 0.025 1.7 9.8 0.5 9 23 736 750 734 750 0.96 15 22 0.025 1.7 9.8 0.5 9 23 755 769 753 769 0.96 16 22 0.025 1.7 9.8 0.5 9 23 774 788 772 788 0.96 17 22 0.46 32 5.8 0.1 9 22 793 806 791 806 0.94 18 22 0.2 13 6.9 0.3 9 23 812 826 811 826 0.96 19 22 2.4e-06 0.00016 22.4 1.6 3 23 834 854 832 854 0.98 20 22 9.5 6.5e+02 1.6 1.0 14 23 1093 1102 1090 1102 0.89 21 22 7.8e-06 0.00053 20.8 2.2 1 23 1108 1130 1108 1130 0.98 22 22 0.00087 0.059 14.3 2.9 1 23 1136 1159 1136 1159 0.97
Sequence Information
- Coding Sequence
- ATGAGCGGAATAACATTACCCGTCGACGAAGATTTAAATGCCGCGCTGAACGACTCTCTCCTGCAAACGGCCGTGCAGAGCATCTCCTCCATAATCTCCTCAAATGGAGAAAGACGTATCGTAGTTGTCCGACCTGTGTCTGCTTTAGAGCACGCCATCGACGCTTCTGATAATGGAAACTCGGTGGATGAAGTTGTTGAGTTGCCGATGGAAATGGACAAGTATATATCTCTGGATACCACGCAGAAAATGTGCAGGACTTGTCTGAGCGAGAAAGCCGACATGCATTCTCTGTTCGAGACTTGGGAAGTGGAGACTATCGCGGAGATGTTGACGTCCTTTGCAGCCGTTCAGTTGTCATTTGGTGATGGTCTGCCGGAGAAGGTGTGTGGAGAGTGCATAGAGCTGGTGGGCAAGTGCTTTGCTTTCAAGCAGCTGTGTGAGCGCTCCGAGTCTGTGCTGCGATGTCTGCTCACCCAGGGACACCTGCAGGGCATGAAGCATGAGTCCGAGCCCAGTCTACTATCAGGCCCTGAAGATGAAATTGCTGACAGTAGGCCATCATCTGCTGTAGATAATGCAAACCAACTGGAAGACTCGTATGAAGGCAAAGAAGAGCCCATGGACTACCACGAGTTCCTGGATGACAACTTCCAAGATTCAGTGACGCTGGAGGACGAAGATGAACACCAACTGCTCTACGTCAGAGATCAGAGACTGAAAGTTAACCACAACAATCTCTCCATCATCACAAACCCCAGTATCACCATCAAACCACAACAATGCATCAAGAGTGACCTAAGGAGGAGAAAAGACAGACAAAAGAAACGATTGAAGAAGGACAAAGTGAAGATGTACATCAATGTGAACAGGGTTGGCAGACCTTCCAAAACATTAGCAACTTTATCCAGAAAATACAAAGAGACCTTCAAGAGAAAGTATGAGAGAGAAATGGAAGCTAACAGTGATGATGTGGACTACTCGCCGGGCAACAGTGTTAAACTGGAGGACATTACGACTGAGAGGGGATTCACGTGTGTTTCCTGTGGAAAGGGATTCCCGGTTGCAAGTAATGGAAGATGGAAGCGGCCAACCCAGAAGAACAGCGAAGAGATGACGAGGCAGCTGGAGTTCCTTATCCCTGGAAACTTCTGTGGTTTCAATGAATCGGGGGATCTGAAGCGCCACGCTCGCAAGCACAAGCGCATTGTGGGGACCAGGGAGGAGGAGGTGGGCGGGGAGCGGGTGCCCTGCTCGCAGTGCCACCTCACCTTCTCCTGCGAGGGAGACCTCAGCATCCACTCCTCCGTGCACAAGACCAGCGAGGGGCGCAGCATCTGCCAGCATTGCAGCAAGGAGTTCCAGACGGGCTTGCAGCTGCGTCGCCACGTGCGCATTCACTTGTCTGACAAGCCACACAAGTGCCGCGTGTGTCACAAGGGCTTCCCGGAGAAAGGCGCGCTCACCCGGCACTTCCGCAAGCACACCGGCGAGACCAGAGAGAAGAAACACAAGTGCGGCAACTGCAGGAAGGCGTACTATGACTGGCACTCCCTGGTCATCCACATGCGCACGCACAGTGGGGAGAAGCCGTGGGTGTGCGCTGACTGTGGCCGCGGCTTCATCGACTCTTACATGTACTATGACTGGCACTCCCTGGTCATCCACATGCGCACGCACAGTGGGGAGAAGCCGTGGGTGTGCGCTGACTGTGGCCGCGGCTTCATCGACTCTTACATGTACTATGACTGGCACTCCCTGGTCATCCACATGCGCACGCACAGTGGGGAGAAGCCGTGGGTGTGCGCTGACTGTGGCCGCGGCTTCATCGACTCTtacatGTACTATGACCGGCACTCCCTGATCATCCACATGCGCACGCACACCGGGGAGAAGCCGTGGGTGTGCGCTGACTGCGGCCGCGGCTTCATCGACTCCCGACTCCTCAACTCGCACATGAGGACTCACAGCAGCTTCAAGCAGTACGAGTGCCCGAGCTGCGATAAAAAGTTCAAGCACGAGTCCACCCTCACCACCCACGTCCGCACCCACACGGGGGAGAAGCCCTACATCTGCACCGTGTGCGGCAACGCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACACACACTCGTAAGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACACACACTCGTAAGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACACACACTCGTAAGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACACACACTCGTAAGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACACACACTCGTAAGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACATGAGGACAAACACTCGTACGTCTTCCTTCATCCAGTCCTCCAACCTGGTCCTGCACGTGAGGACACACACTTGTGAGCGTCCCTATGGATGTGAATACTGCAACAAGAAGTTCTCCAGCTCCTCGTCTCTCACCACCCACACCAGGATCCACACCGGGGAGAAGCCGTACCACTGCAAAGTCTGCGAGAAAAGGCCTGGCTCGAATCCAGTCACTGCTGATTTCTTTAATGAGTTAACCACCATGTTGAGTCTTACATCTCACCTAAAGATACCTATTATACTGACTGGTGATTTCAATATTCATATAGAAAGGCAAGCTGATCCGCATGCAAAGAAGCTTAACAGACTGCTGGTTGACCACAGCCTCTCGCAGTGGGTCGTATCTCCCACTCACGATGCCGGAGGAACCCTTGACTTGCTCATCACACGCAGCGACTGCACCCCATCATCTACAGCTGTTATCGATGTGGGACTTTCTGACCATCGGCTGATCGTTGCTGGGTTTTGTCTCTCAATTCCATCGCCTCTCTACACTACTATTATTACCAGAAATTGGAAGGACTTCTGCCCCAAAAAATTTCGGTTTCGTCTTGagaactctgtcttgtgctctgACGCCATCTATACTGACCAAAACATAGACCATCTTGTAGGACAGTACAATTCTACACTCAACGACATCCTAGATGAGCTTGCTCCATTCACTTCGAAAACATTGCGAGTGCGTGGCTCTCGACATCTGTGGTTTGACTCCAACTGCAGAGCTGAAAAAGCCAAGGTCCGCAAACTCGAAAGGGTTTACAGGCGACTGAAGACCTCTGTTTCTAAGAATGCTTGGATTTCTGCCCAGAAGTTGTTTGCCCGCCACGACATGACAGCTCACATGAGGACGCACACGGGAGAGAAGCCCTTTGAGTGTTCTGTCTGCACCAAGCGCTTCACCACGCCGGGGCAGCTGCATCAGCACACACGCATACACACAGgGGAGCGACCCTACACCTGCAGTATCTGCATGAAAGGCTGCACCACGTCCAGCTACCTCAAGAAGCACATTGCCAAGTCTCACGGCATGAAAGCCAACATGTCAGAGGTGCTCCCTGGCGTAGAGATAATCACCACCCCTAAAGAGGAAGTCATCGAACCCACAGAACACCAGATAGTCAGTCCAATCATGGACGAAACCAAAATCATCCCTGCCGAAGACCTGATAGCCGTTAGCCAAGCCATCAATACATTAACTCTAACTAGTAACACTCTGAATGTTGTCGCAGTCGCGAATAGCAACGGTGAGCTCAGCATAACGACAGCCAACGCTCTCAATGTTGCCACACTCACAGCAGACGGAGATAACGTAAGCACTATTGTTGCCAACACGCTAGTTTCTGAAGAAAAGCTGTACCAAATAGATCCTTCATTATTGAGAATACATCACGTTTCTGCGGCTAATCTTATACACAATGGACAACTCACAATCAGTGAGCTCTCCACTGAGGATAGTCAATAA
- Protein Sequence
- MSGITLPVDEDLNAALNDSLLQTAVQSISSIISSNGERRIVVVRPVSALEHAIDASDNGNSVDEVVELPMEMDKYISLDTTQKMCRTCLSEKADMHSLFETWEVETIAEMLTSFAAVQLSFGDGLPEKVCGECIELVGKCFAFKQLCERSESVLRCLLTQGHLQGMKHESEPSLLSGPEDEIADSRPSSAVDNANQLEDSYEGKEEPMDYHEFLDDNFQDSVTLEDEDEHQLLYVRDQRLKVNHNNLSIITNPSITIKPQQCIKSDLRRRKDRQKKRLKKDKVKMYINVNRVGRPSKTLATLSRKYKETFKRKYEREMEANSDDVDYSPGNSVKLEDITTERGFTCVSCGKGFPVASNGRWKRPTQKNSEEMTRQLEFLIPGNFCGFNESGDLKRHARKHKRIVGTREEEVGGERVPCSQCHLTFSCEGDLSIHSSVHKTSEGRSICQHCSKEFQTGLQLRRHVRIHLSDKPHKCRVCHKGFPEKGALTRHFRKHTGETREKKHKCGNCRKAYYDWHSLVIHMRTHSGEKPWVCADCGRGFIDSYMYYDWHSLVIHMRTHSGEKPWVCADCGRGFIDSYMYYDWHSLVIHMRTHSGEKPWVCADCGRGFIDSYMYYDRHSLIIHMRTHTGEKPWVCADCGRGFIDSRLLNSHMRTHSSFKQYECPSCDKKFKHESTLTTHVRTHTGEKPYICTVCGNAFIQSSNLVLHMRTHTRKSSFIQSSNLVLHMRTHTRKSSFIQSSNLVLHMRTHTRKSSFIQSSNLVLHMRTHTRKSSFIQSSNLVLHMRTHTRKSSFIQSSNLVLHMRTNTRTSSFIQSSNLVLHVRTHTCERPYGCEYCNKKFSSSSSLTTHTRIHTGEKPYHCKVCEKRPGSNPVTADFFNELTTMLSLTSHLKIPIILTGDFNIHIERQADPHAKKLNRLLVDHSLSQWVVSPTHDAGGTLDLLITRSDCTPSSTAVIDVGLSDHRLIVAGFCLSIPSPLYTTIITRNWKDFCPKKFRFRLENSVLCSDAIYTDQNIDHLVGQYNSTLNDILDELAPFTSKTLRVRGSRHLWFDSNCRAEKAKVRKLERVYRRLKTSVSKNAWISAQKLFARHDMTAHMRTHTGEKPFECSVCTKRFTTPGQLHQHTRIHTGERPYTCSICMKGCTTSSYLKKHIAKSHGMKANMSEVLPGVEIITTPKEEVIEPTEHQIVSPIMDETKIIPAEDLIAVSQAINTLTLTSNTLNVVAVANSNGELSITTANALNVATLTADGDNVSTIVANTLVSEEKLYQIDPSLLRIHHVSAANLIHNGQLTISELSTEDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -