Afus008104.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637339.1:18368714-18379857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.051 3.5 8.8 0.1 1 23 162 185 162 185 0.95 2 13 0.04 2.7 9.1 1.4 1 21 192 212 192 214 0.92 3 13 0.0027 0.19 12.8 4.6 1 23 220 243 220 243 0.98 4 13 5.7e-07 3.9e-05 24.4 2.3 1 23 249 271 249 271 0.99 5 13 8.6e-05 0.0058 17.5 2.7 1 23 276 299 276 299 0.97 6 13 0.0055 0.37 11.8 3.5 2 23 308 328 307 328 0.97 7 13 0.00057 0.039 14.9 10.1 1 23 334 356 334 356 0.98 8 13 3.1e-06 0.00021 22.0 0.4 1 23 362 384 362 384 0.98 9 13 5.1e-06 0.00035 21.4 1.5 1 23 390 412 390 412 0.98 10 13 5.9e-05 0.004 18.0 0.5 1 23 418 440 418 440 0.98 11 13 3.1e-05 0.0021 18.9 6.4 1 23 446 468 446 468 0.98 12 13 4.4e-06 0.0003 21.6 0.6 1 23 474 496 474 496 0.98 13 13 0.00012 0.0081 17.1 1.9 1 22 502 523 502 526 0.90
Sequence Information
- Coding Sequence
- ATGTCTGAAAGTGCTTCGGCGGAGCCGGTTGAGGATTTGAACATGACAGTCGAGAGTGACGGCGAATTTCAACAACATAATTCTTCCTCGGAAGACAAAATTATAATTGGGAAAATGAGCCGAAAGCACAATGCGTCAAAAGACAAggtgaagaagaaaaagaaaaagaagaagaagatatccGAGTCTGAGAGTGTTGCCGCAGAGAGTGAGGATTTCCCCAATtttaaatttggaccacagacaACACTGTCAGGTGGTTTGGGACAGACTATAGACGTAGTAACAATAAAGCAGGAGTATGACGCTGATGATATGGATGAAGACAATGAAGAAGATGAAGAGGGTCAGGAGGAAGCAGATGATCATGTGGACGAGAATGTGAAggtgaaagaagaaaatgtggACAAGCGTGCTAGGGtcaaaaaaaTCCGCGTGGTGCTGAACACCGAGCAGTTGGCCGACCTGAACGTGCGCTTCACGTTTTCCTGCCAGCTGTGCGCGGGGAAGTTTGAGCAGTTGCCCGACCTGCAGGCGCACCTGCAGCAGCAGCACAAGCACGCGCTGGGCACCTTCCTGTGCGCCACCTGCGACAGGGCCTACCAGACCATGGACGATCTCAGGATGCACATGCAGTGCCACGTGGGCGTCGGCACCTACAAATGCGAGGAGTGCAACAAGCTGTACCACCACCAGCAGAGCCTCCTCGCGCACCGCAAGCGCTGGCACTCTGACGAGCGGCCCTACGAGTGCCAGCACTGCGGCAAGACCTTCAGCCTGAGCCAGGACCTCAAGGGGCACATGCGCAGCCACGACACAGACACCTACCAGTGCAACATGTGCGACAAGGCGTTCAAGAGTGACAAATACCTCCTTCTACACCAAAAGCACGTCCACATGGGGCACAAACTGGCCAGAGTGGAATGCAAGGTCTGCCATAAAACCTTCCTGAAAAAGAGCTTTCTAACGCATATGAAGATACACCAGGAGAACCGGATACACAAGTGTCACTACTGCGGGAAGTGCATGACCACCCACTACAGCCTCATGGCTCACATCAGGAGACATGAAGGAGTCAAGCCGTTCTCCTGCACGATTTGCTCCCAGTCGTTTGTGGACAAAGGCAAACTGGCGCGCCACATCAACTCCCACAGCGACACCAAGGACTTCCAGTGCGACGTGTGTGAGAAGAGCTTCTCTGAGAGCCAGTACCTGCGGCAGCACAAGAGGATACACGACGTGTCCAAGGATTACCCATGCCGGGTGTGCGGTACCATGTTCAAGAGCATGAACTCCGTGTGGTCGCACATGAGGAAGCACACGCACACAGACAGATACGAGTGCCACTTCTGCGGCAAGACGTGCTACAGGCCTGACCACCTCCGCTCCCACCTGATCAGCCACACTGGTCTGAAGGAGTTCCAGTGTGAGATCTGCTCCAAGCGCTTCGCCAAGGCCTACGACCTCAACGAGCATCGCCGAGGGCACTCTGGGGAGCGGCCATTTGTCTGCGATGTGTGCGGAAGAGCATTTGCAAGACACGGGGAATTCAGGAGGCACAAAACTCGCAAGTACCACCTGGAGAAACTTAAACTGCTGGCGAATCAGGACGAGCCACCCGCAGAATCAGCATCACTGCCACTTGACGATAGTAACGCCATAGACAATAACGAATAA
- Protein Sequence
- MSESASAEPVEDLNMTVESDGEFQQHNSSSEDKIIIGKMSRKHNASKDKVKKKKKKKKKISESESVAAESEDFPNFKFGPQTTLSGGLGQTIDVVTIKQEYDADDMDEDNEEDEEGQEEADDHVDENVKVKEENVDKRARVKKIRVVLNTEQLADLNVRFTFSCQLCAGKFEQLPDLQAHLQQQHKHALGTFLCATCDRAYQTMDDLRMHMQCHVGVGTYKCEECNKLYHHQQSLLAHRKRWHSDERPYECQHCGKTFSLSQDLKGHMRSHDTDTYQCNMCDKAFKSDKYLLLHQKHVHMGHKLARVECKVCHKTFLKKSFLTHMKIHQENRIHKCHYCGKCMTTHYSLMAHIRRHEGVKPFSCTICSQSFVDKGKLARHINSHSDTKDFQCDVCEKSFSESQYLRQHKRIHDVSKDYPCRVCGTMFKSMNSVWSHMRKHTHTDRYECHFCGKTCYRPDHLRSHLISHTGLKEFQCEICSKRFAKAYDLNEHRRGHSGERPFVCDVCGRAFARHGEFRRHKTRKYHLEKLKLLANQDEPPAESASLPLDDSNAIDNNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -