Afus022101.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637360.1:12979885-12982200[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.083 5.7 8.1 3.2 1 23 145 167 145 167 0.92 2 15 0.00022 0.015 16.2 0.5 3 23 172 192 170 192 0.96 3 15 0.29 20 6.4 0.2 2 23 200 221 199 221 0.95 4 15 8.8e-05 0.006 17.5 1.9 1 20 227 246 227 248 0.95 5 15 0.0069 0.47 11.5 1.9 1 22 255 276 255 278 0.87 6 15 7.1e-06 0.00048 20.9 0.5 3 23 387 407 385 407 0.96 7 15 3.5e-05 0.0024 18.7 3.9 1 19 414 432 414 436 0.95 8 15 0.0008 0.054 14.5 2.0 1 23 442 465 442 465 0.94 9 15 5.2e-06 0.00035 21.3 0.4 3 23 481 501 480 501 0.99 10 15 8.3e-05 0.0056 17.6 2.9 2 23 508 529 507 529 0.97 11 15 2.6e-06 0.00018 22.3 0.4 1 23 535 557 535 557 0.96 12 15 0.00073 0.05 14.6 1.8 1 23 563 585 563 585 0.98 13 15 1.1e-06 7.4e-05 23.5 1.4 3 23 593 613 591 613 0.96 14 15 1.1e-05 0.00075 20.3 0.7 1 23 619 641 619 641 0.98 15 15 1.5e-05 0.001 19.9 1.0 1 23 646 669 646 669 0.98
Sequence Information
- Coding Sequence
- ATGCAGTCCTTGTACGTCCCAATGGTCGCCGAAGCCGTGAAGCCCTGCTTGAACCTGATGCTCATTGCAAGCACCCAACTAGAAGTCAACGAAAAAGACGGAATGCCTCGACAAATATGCTCCGATTGCACAATCAGACTCGAGCACGCATTCTCATTCAAGCACATGTGCGTAGAAACAGATAGAAAACTAAAAAGATACATGCAAATACACAGAAGCAAAGAACCGCTCTTGCAGGGAACAAACGTCAAAGTTGAGAGTGGAAATCAAAATTCAGTATCAAACAATGAAATAATTGATTTTAGTACAATGTTTAATTCTGACATGGTGGCTGTGAAGCAAGAGTCGCGAGAGAACGCTGAAGGGTTCTCAAAAAATGAACCACTAGTGAAAGCCAATGAAAAATGTGTCCAAGCTGACTTAGACGATGTTCACGAGTGTATTCAATGCAATAAAAAATTTAGAACGCTGTTCGGGTACAAGGTACACGTGAAGAACCACTTCAAACTAGCGTGCTCAAAGTGTGACAAGCTATTTGTGAACGAAGCCAGTCTGAAGGAGCATAAACGGAGCCACAAGAAACAATCCGAGAAGCTGGAATGTCCTTTGTGTCAGGCGAGGCATTCCTCTGCAGACTCCCTGATCAAACACTTCATCGTGCACAAGAAAACGACTAACTACACGTGTGAAAACTGCAACAGAACCTTTTCTAAATCCAGCAGCTACGAACGCCATACTTCTTTTTGCAACGAGGATAAAAAACACCATTGTACAGTTTGCACCAAGTCGTTTGATACTTCCAAGGCTCTTGTTTTACATAACGAGCTGATACACGGCAAAATTGGATCAGACGATGATGCTTCTATTAAGGAGGAGTTAGAAGGTGATGCAATGGAGATTCCGTTAAAGACTTTAAAGTTACGAGCGAACGGCTTGTTGAGTAAAAGTCCACCGAACCCCTACGTCTTTGAGAGTATCATGGAGCCGGTTGTAAACATAAAAGAAGAACCTATTGAAGTCATGCTGGAAGATGAAATGGACGATAATGACGCAGACACGGCGGACTTTCAAGTTGATTACGATTCAGATGATGAGGTAATCAAAAGCAAAAAGAAAAGTAAGAAACTCAAAGAGGAGAATGGAGAGAACAAGTATGGATGCACTTATTGTGGGTTGACGTTTTCAAGAGCCTCCGGTTTGAAGAGGCACGAAAGCTCTCACAAGGAAATGAAACAGAAATTCACGTGCGACTATTGTCCTAAGACGTTTAAAAGAAGAGACCACATGCGGAGACACAAGTGGCAGCACGCTGAAAGTAAACCGCACATCTGTGAAGTCTGTAACAAAGGATTCGGTCGGTTGGAGCACCTTGCCAAGCACAAAGAGTCTCGCCATTCCGTCGAAGTAAAAGACAAAGAGAAGAATCCTAAATCTGTCCTCTGCACAATCTGCAGTAAAGCTTTCACGACGTTGAAATATCTGGAGATCCACATGCGCATACACCAGGTGGATAAAGGAATAACTTGTAAGCGATGTGAAAAATCTTTTGATACTAAATTTGATTTGAAAGAGCATAAGAAAACTCACGCGGCGGATAAACCTTTTTTGTGTACGGAATGCGGACAGAGCTTCATAAAGAATGAATATTTAATAGTGCATATGCGGCGACACCGCGGCGAAAAACCTTTCAAATGCAGATTCTGCGATAAAGGTTTCTTTAGAACAACAGATCTAGTAGCGCATGAACGATATCACACGGAAGAGAAGACGCATTTGTGTACGATTTGTGGGAAAGGATTCCAACGTCAATATAATCTAACGGTTCACTTGAGAGTGCACACTGGAGAAAAGCCATACGCGTGTTCGTATTGCGATAAGAGATTTGCGCAAGGCAACGATCTGAAATCGCATGTGCGTCGACACACAGGCGAAAGATTCAAATGCGAAGTCTGCGGAGAGGGTTTCATCCAGGGTTATCATTTGACGCAGCACAAGAGAACGGTGCACGGGATCGAGAGCACGCAGCCTGTCCGAAGAGTGGTCAAACATCCGATGGCCAGCTTACTGAACCCTCCGCCAGTTCCTAAAACGGCTCGCAGTCGAAACACGGCAAAGAAGCAAATGGAAAAGATGGCTGCTCTTGCGGCGCAATTGCAGCTGGCCGGGACAGCTGTTCCCGTATTTCAACTTCCGAAGCCCGTTGTTGCCTCAGATGTGCCGTTGAACTATCAAATGCCTTTAGATCTAAACAAAGTTGAAAATGTACCTCCTATTAGTATACCTGTACCTAATTTGGATACAAAGACAAATCAGTAG
- Protein Sequence
- MQSLYVPMVAEAVKPCLNLMLIASTQLEVNEKDGMPRQICSDCTIRLEHAFSFKHMCVETDRKLKRYMQIHRSKEPLLQGTNVKVESGNQNSVSNNEIIDFSTMFNSDMVAVKQESRENAEGFSKNEPLVKANEKCVQADLDDVHECIQCNKKFRTLFGYKVHVKNHFKLACSKCDKLFVNEASLKEHKRSHKKQSEKLECPLCQARHSSADSLIKHFIVHKKTTNYTCENCNRTFSKSSSYERHTSFCNEDKKHHCTVCTKSFDTSKALVLHNELIHGKIGSDDDASIKEELEGDAMEIPLKTLKLRANGLLSKSPPNPYVFESIMEPVVNIKEEPIEVMLEDEMDDNDADTADFQVDYDSDDEVIKSKKKSKKLKEENGENKYGCTYCGLTFSRASGLKRHESSHKEMKQKFTCDYCPKTFKRRDHMRRHKWQHAESKPHICEVCNKGFGRLEHLAKHKESRHSVEVKDKEKNPKSVLCTICSKAFTTLKYLEIHMRIHQVDKGITCKRCEKSFDTKFDLKEHKKTHAADKPFLCTECGQSFIKNEYLIVHMRRHRGEKPFKCRFCDKGFFRTTDLVAHERYHTEEKTHLCTICGKGFQRQYNLTVHLRVHTGEKPYACSYCDKRFAQGNDLKSHVRRHTGERFKCEVCGEGFIQGYHLTQHKRTVHGIESTQPVRRVVKHPMASLLNPPPVPKTARSRNTAKKQMEKMAALAAQLQLAGTAVPVFQLPKPVVASDVPLNYQMPLDLNKVENVPPISIPVPNLDTKTNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -