Basic Information

Insect: Agapetus fuscipes
Gene Symbol: -
Assembly: GCA_951799405.1
Location: OX637332.1:12997112-13012947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00018 0.012 16.5 0.2 1 23 263 285 263 285 0.98

2 12 4.1e-06 0.00028 21.7 0.3 2 23 290 311 290 311 0.97

3 12 1.1e-06 7.6e-05 23.4 3.8 1 23 317 339 317 339 0.98

4 12 0.044 3 9.0 2.0 3 23 353 373 351 373 0.94

5 12 0.0006 0.041 14.9 1.3 2 23 380 401 379 401 0.96

6 12 2.7e-07 1.8e-05 25.4 2.2 1 23 407 429 407 429 0.98

7 12 1.6e-06 0.00011 22.9 1.2 3 23 437 457 435 457 0.96

8 12 1e-05 0.00071 20.4 0.3 1 23 463 485 463 485 0.99

9 12 2.1e-05 0.0014 19.4 1.0 1 23 491 513 491 513 0.97

10 12 8.1e-06 0.00055 20.7 2.8 1 23 519 541 519 541 0.97

11 12 8.5e-07 5.8e-05 23.8 0.9 1 23 547 569 547 569 0.97

12 12 2.8e-06 0.00019 22.2 0.4 1 23 575 597 575 597 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00018	0.012	16.5	0.2	1	23	263	285	263	285	0.98
2	12	4.1e-06	0.00028	21.7	0.3	2	23	290	311	290	311	0.97
3	12	1.1e-06	7.6e-05	23.4	3.8	1	23	317	339	317	339	0.98
4	12	0.044	3	9.0	2.0	3	23	353	373	351	373	0.94
5	12	0.0006	0.041	14.9	1.3	2	23	380	401	379	401	0.96
6	12	2.7e-07	1.8e-05	25.4	2.2	1	23	407	429	407	429	0.98
7	12	1.6e-06	0.00011	22.9	1.2	3	23	437	457	435	457	0.96
8	12	1e-05	0.00071	20.4	0.3	1	23	463	485	463	485	0.99
9	12	2.1e-05	0.0014	19.4	1.0	1	23	491	513	491	513	0.97
10	12	8.1e-06	0.00055	20.7	2.8	1	23	519	541	519	541	0.97
11	12	8.5e-07	5.8e-05	23.8	0.9	1	23	547	569	547	569	0.97
12	12	2.8e-06	0.00019	22.2	0.4	1	23	575	597	575	597	0.97

Sequence Information

Coding Sequence: atggaAATGTCGAATCTGTTGACGAATCCTCTGGAGATCAACTTAATATGCAGGGCGTGTTTGGGAAGGAAAGGCGACATGAGGCCTTTATTTGGTTCCTGCTTAGACGAAATGCTGATGTCCTTTGCAAACGTTCAGgTAAAAGAAGGAGACGGTCTACCCCATTTGATGTGTGTACAATGCGTGCTTCAAGTAAGCCGTGCATTTACATTCAAACAGTTGTGTGAGAAAAGCGCTGCCACCTTGCAGCTCTTCGTTAGTGAAGAATTTCAGgaACAATTGGCAATGAATGACAAGACATTAGAAAATGCGGATATTGATACTCTTATTTTGCCTGATCAAACCACAGAAGaatgcATCATAGAGGATTTTTCTCCAATAGACATGGCTGGAGAACTCACCTTGGATGAAAGTGGTGTCGAGTTGAAACAAGACAATCCTTTGGAAAGTCTGGAAGATGACAATTTTGatgcaTATTCAGACTGTGGAGAGGAAACTGGTTCCATAAAAGAAGAAACTTGCGATGAAGCTGAGGAAGATGACATCAACGAGGAGGTAACAGATCGCTTAGTGGTTGCTGTGAAACCTGATCAAGTGCTTCAGTTTGGGGAACACACAGTGCTGGCCATACCATCTGACACTCCTTCACACATTATAGAAATACGACCTGATGGAACTACTCATTTGATACCACGAGAAGATGCAAGTGAAGAATTAAAAATGTCAACTAATAAGCTTTCGATACAATTAAAAGCACACAATTCAAAGATGGATCCACAAGGAAAACACAAATGCCCTGTTTGTGGAGATGCCTTCAATATGAAGGTTGACTTAAAGttgcaTATGATAATACATCCATCTGAGAATGTATGCGACGTGTGCAATAAAACGTTCCCCGAGCCACGCGCCCTCAAGCGACATCTCAAGACTCACCTGGTGGATAAGCCGCACAAGTGCGACACGTGCGGCAAGTCCTTCGCCGAGAGCTCCAATCTGAACAAACACAAGAAGAGGCACACCGGAGAACTGAGGAATGTCCAGGGAAAGCCTCATCTGTGCAGtgtttgtgGGCGTGGTTTCAAATGGGCAACTTCTCTCtctaaacattttaaatatcaCACGGGAAGGAAACTTTTGTGTTGCAAATATTGTCCCAAACAGTATGTGGAAGCCAGATCTCTACGCATTCACGTCAGGTCGCATACGGGAGAAAAACCATACATTTGCACCATTTGTAACAAAGGATTCACTCAGCGATGCAACTTGGAGAAACACATTCGAGTCCACACCGGAGAAAAACCACATCTGTGTAATATCTGCGGTAAAGGATTCTCACAAAGAGGATATGTGACCATTCATATGAGAACGCATACAGGAGAAAAGCCATATTCTTGCCAAACTTGCGGAAAAGGATTTGCTGGTGCAAACACTTTGAATATTCATCGTAGAACTCACACAGGAGAAAAGCCATTTGCCTGTGACGTGTGTCATAAGTTGTTTGGTCGACAGGAAACATTGATCATTCACCAGAGGACACACACCGGAGAGCGACCTCACATATGTACAGTTTGCAATAGAGGTTTCACAAGTTCTGGTCACCTGACTGGTCACATGAGATCTCATACAGGAGTCAAACCCCATGTCTGCTCGGTGTGCGATAAGCGATTTGCGGGAAGCAGCAGTCTGAAGGTTCATATGAGACTTCACACTGGAGAAAAGCCTTACATGTGTGACCTGTGTGGTAAAGGCTTTTCCCAAAGTTCAGCGCTGGCAAACCATCACGCCAGTCATGCCAAAGGGGAAAGTAACAGTGCACCAGCCATCGCAGACTGGACCACTGACATACATACAGGTAGCTAG
Protein Sequence: MEMSNLLTNPLEINLICRACLGRKGDMRPLFGSCLDEMLMSFANVQVKEGDGLPHLMCVQCVLQVSRAFTFKQLCEKSAATLQLFVSEEFQEQLAMNDKTLENADIDTLILPDQTTEECIIEDFSPIDMAGELTLDESGVELKQDNPLESLEDDNFDAYSDCGEETGSIKEETCDEAEEDDINEEVTDRLVVAVKPDQVLQFGEHTVLAIPSDTPSHIIEIRPDGTTHLIPREDASEELKMSTNKLSIQLKAHNSKMDPQGKHKCPVCGDAFNMKVDLKLHMIIHPSENVCDVCNKTFPEPRALKRHLKTHLVDKPHKCDTCGKSFAESSNLNKHKKRHTGELRNVQGKPHLCSVCGRGFKWATSLSKHFKYHTGRKLLCCKYCPKQYVEARSLRIHVRSHTGEKPYICTICNKGFTQRCNLEKHIRVHTGEKPHLCNICGKGFSQRGYVTIHMRTHTGEKPYSCQTCGKGFAGANTLNIHRRTHTGEKPFACDVCHKLFGRQETLIIHQRTHTGERPHICTVCNRGFTSSGHLTGHMRSHTGVKPHVCSVCDKRFAGSSSLKVHMRLHTGEKPYMCDLCGKGFSQSSALANHHASHAKGESNSAPAIADWTTDIHTGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -