Afus007881.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637339.1:12407745-12426473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0024 0.16 13.0 1.6 1 23 172 194 172 194 0.98 2 17 3e-06 0.0002 22.1 7.0 1 23 200 222 200 222 0.98 3 17 1.3e-05 0.00086 20.1 0.1 1 23 228 250 228 250 0.98 4 17 3e-05 0.002 19.0 0.1 3 23 258 278 256 278 0.98 5 17 7.5e-05 0.0051 17.7 3.7 1 23 284 306 284 306 0.97 6 17 3.2e-06 0.00022 22.0 0.8 1 23 312 334 312 334 0.98 7 17 7.2e-08 4.9e-06 27.2 0.9 1 23 340 362 340 362 0.99 8 17 0.00018 0.012 16.5 1.0 1 23 368 390 368 390 0.96 9 17 0.0022 0.15 13.1 0.1 2 23 470 491 469 491 0.96 10 17 0.00024 0.016 16.1 4.6 1 23 497 519 497 519 0.97 11 17 2.5e-06 0.00017 22.3 0.3 2 23 525 546 524 546 0.96 12 17 0.00099 0.067 14.2 3.2 1 23 552 574 552 574 0.95 13 17 0.0064 0.43 11.6 4.8 1 23 581 603 581 603 0.97 14 17 4.5e-05 0.003 18.4 0.4 2 23 610 631 610 631 0.98 15 17 1.2e-05 0.00078 20.3 0.3 1 23 637 659 637 659 0.98 16 17 0.0063 0.43 11.6 1.6 1 23 665 687 665 687 0.98 17 17 3.3 2.2e+02 3.1 0.3 1 8 693 700 693 701 0.89
Sequence Information
- Coding Sequence
- ATGCAGGGTATTGAATCATTCGAAAAAATCTGCAGGACTTGCCTTGAGAACTCTGGATCAGTGCCCATCTTCTCCAAGGACGAAAAACAAGTGCAGTTCTCGGAAATGCTTCTGGTCTGCGCTTCCATTACAGTTTTGCCAGGAGAGCAGAGCCCGCAGAGGATTTGTTCTCTCTGTGTGTACCGCTTGAGAGATGCGTTCTTATTTCGTAACCAGTGTCAAAAAAACGAAGCCAAGCTGAGAGaagttctaaatttgaaattagAAATCAAGCCAGAAATATTAGATGTGAAAGATTCTCAACAAGATGACGGCTATTCCGACTGGGCGGCATTTGACAATGACGTTTGCGAGGACGATCTGCCTTTGAAGGAATTCACAAAGGAAAATAGCCTAGAGGAGGAAAAGACTGAAAAGAGAAAGAGAAAACTAGCAAAGAGACTGTTGAAGGCGAAGAATAAAAAGATCAACAAATCAAGGAAAAAAgtgaaatacaaaaatgtacttggTCAGTTCATCTGTGACTTGTGTGGCCACTGCGTCAGAGTTAAATGGGAACTAATAGCTCACTTCAGGCGACACACGGGGGAAAAACCCTACAAATGCAAAATATGCGGAAAGACCTTCTCCCACGAGACGAGCCTACGAAACCACTATCGCCACCACTCTGGCACTAAAGCGTACATCTGTGACATGTGCGGAAAAGGGTTGAGCACTGCCGACACGTTGAAGGCGCACAGACGATTGCATACCGGGGAGAAGCCTTTTGGTTGTGAGGAGTGTGGGAAGGATTTCAGAGCGCTGGCAAACTTGAGGGCTCACCAGAAGATACACACACAGGATAAACGGCATCCTTGTCATGAATGTGGCAAGCTGTTCTACACCAAGTCGGACATGCGAGATCACGCACGTCGCCACACTGGAGACCAGCCCTACGCCTGCTCTCTGTGCCCCAAACGCTTCACGGGCAAGGCCAACTTCACAACGCACATGAAGATACACGCGGGGCAGAAGGATTACAAGTGCCCTGACTGCCCCAAGACTTTTGTTAGCAAGGACTCGATGCGTCGTCACGGCCGCACGCACAGTGGTGAACGGGCGTTTGCATGTCTGCAGTGTGATCGCAGGTTTGCCCACAGGTCTTCCCTGGTCTCTCACCGCGCCATACACTCCAATACAAAAGACTATGTGTGCGAAATCTGCAATCAAAGATCTTGCCTGGATAACGAGGGCAACAATCCAATTTTTGGTAAAAAAGACAAAGAAGCACCAGTATCAGAAATGTTGTTCGCCTGCACCTCCATCACAATAGTGAATTTTGACAACCCGACTCCATTTTCATTGTGGAGTAGAAAAGGCAAATACAGAGTCAACGTTAAGAAAGAAGAAGGCGCAGAGCTGCAGTTGATCTGTGACAAGTGCAGTGCTGTGCTGTCTTCTAAGAAGGCTCTGATTCTCCATATGAAGATCCACACAGAGGGCCGCCCACACAAATGTGACGTCTGCCAGAAAGGATTCAAGATGAAGGAGCACCTGTATCGCCACCGCATTGTTCATGGCGAGAACGAGAGTGTCTGCGATATCTGCGGCAAGGGCTTCAAGTTCAAGACCTCCCTCACGGCCCACATGACCATCCACACGGGGGAGACGCCCCACAGCTGCAGGGTGTGCGGCCAGAGCTTCAGAACCTACAAGCAGATGAGGGCGCATAGGGACAACCACGGCGTCAGGACTAAGAACCACGTCTGTGAGATTTGTGGCAAGAAGGTGTTCTCGAGGAGTAGTTTGAACTGTCACCGCCGCACCCATACAGGAGAGCGCCCTGAGCAGTGCCCGCTGTGCCCCAAAGCCTTCAGCACCAAGTCCATCCTCAGCACACACATCAAGTCTCATCTGGGGCAGAAGGACCATCAATGCCCCGATTGCGAGAAGTCCTTTGTCACAGGGGGAGCTCTGAAGGCGCACTCCAACACGCACAGGAGCGACAAGCCCTTCAGGTGCGAGGTCTGTGACAAGCTGTTCAGCTGCCCGCAGAGCCTGCGCACGCACGAGGCCACTCACTCCCTGGCCAACAACTTCACCTGCAACATCTGCGGGGAAAGGTGA
- Protein Sequence
- MQGIESFEKICRTCLENSGSVPIFSKDEKQVQFSEMLLVCASITVLPGEQSPQRICSLCVYRLRDAFLFRNQCQKNEAKLREVLNLKLEIKPEILDVKDSQQDDGYSDWAAFDNDVCEDDLPLKEFTKENSLEEEKTEKRKRKLAKRLLKAKNKKINKSRKKVKYKNVLGQFICDLCGHCVRVKWELIAHFRRHTGEKPYKCKICGKTFSHETSLRNHYRHHSGTKAYICDMCGKGLSTADTLKAHRRLHTGEKPFGCEECGKDFRALANLRAHQKIHTQDKRHPCHECGKLFYTKSDMRDHARRHTGDQPYACSLCPKRFTGKANFTTHMKIHAGQKDYKCPDCPKTFVSKDSMRRHGRTHSGERAFACLQCDRRFAHRSSLVSHRAIHSNTKDYVCEICNQRSCLDNEGNNPIFGKKDKEAPVSEMLFACTSITIVNFDNPTPFSLWSRKGKYRVNVKKEEGAELQLICDKCSAVLSSKKALILHMKIHTEGRPHKCDVCQKGFKMKEHLYRHRIVHGENESVCDICGKGFKFKTSLTAHMTIHTGETPHSCRVCGQSFRTYKQMRAHRDNHGVRTKNHVCEICGKKVFSRSSLNCHRRTHTGERPEQCPLCPKAFSTKSILSTHIKSHLGQKDHQCPDCEKSFVTGGALKAHSNTHRSDKPFRCEVCDKLFSCPQSLRTHEATHSLANNFTCNICGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -