Afus003627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapetus fuscipes
Gene Symbol
-
Assembly
GCA_951799405.1
Location
OX637334.1:20003363-20033694[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.1e-05 0.00078 20.3 7.1 1 23 122 144 122 144 0.97
2 21 0.00019 0.013 16.4 6.0 1 23 150 172 150 172 0.97
3 21 8.3e-05 0.0056 17.6 6.7 1 23 178 200 178 200 0.97
4 21 3.4e-05 0.0023 18.8 5.3 1 23 206 228 206 228 0.97
5 21 1.2e-07 8.4e-06 26.5 3.6 1 23 234 256 234 256 0.98
6 21 7e-06 0.00048 20.9 7.7 1 23 262 284 262 284 0.98
7 21 8.3e-06 0.00057 20.7 6.9 1 23 290 312 290 312 0.98
8 21 1.4e-06 9.8e-05 23.1 4.7 1 23 318 340 318 340 0.98
9 21 9.2e-07 6.3e-05 23.7 5.2 1 23 346 368 346 368 0.98
10 21 9.3e-07 6.3e-05 23.7 4.9 1 23 374 396 374 396 0.98
11 21 5.4e-06 0.00037 21.3 1.2 1 23 402 424 402 424 0.97
12 21 3.1e-07 2.1e-05 25.2 4.7 1 23 430 452 430 452 0.98
13 21 2.4e-07 1.6e-05 25.6 5.7 1 23 458 480 458 480 0.99
14 21 5.4e-07 3.7e-05 24.4 4.9 1 23 486 508 486 508 0.99
15 21 1.7e-06 0.00011 22.9 4.3 1 23 514 536 514 536 0.98
16 21 1.2e-07 8.1e-06 26.5 4.2 1 23 542 564 542 564 0.98
17 21 1.9e-05 0.0013 19.5 7.7 1 23 570 592 570 592 0.98
18 21 9.8e-05 0.0067 17.3 6.8 1 23 598 621 598 621 0.95
19 21 9.7e-05 0.0066 17.3 0.3 1 23 627 649 627 649 0.97
20 21 0.025 1.7 9.8 4.3 1 23 659 681 659 681 0.99
21 21 1.1e-05 0.00074 20.3 1.8 1 23 687 709 687 709 0.97

Sequence Information

Coding Sequence
ATGGATCCTCTCGAAATTAAAcctttgtttattttgaatCCGGTTGAGATTAAACCATCTTTTACAACACCCGACGGTAAAACTACCTTCCTCACCAATGTGACGGATCCAAAGGCTTTCATAACGACGAGTGATGGAAAAACCACCTTCCTCACAAACCCTCCTGAAATCAAGTCGGCGTTCATCACCAATACAAGCAGCTCGGGGGTGGTCTCCGAGATCAAGTCCACCTTTATCACTAACCCACCGGAGTTGAAGTCTCCCTTCATCATCAATACGacggagatcaaacccttggtGGACGCGGCTGCCTATATATGCTCGGATCTGCTGCTCATTCCCAAACCTAAAAGCGAGACGCCCCACCACTGCCAGGTGTGCGGCAAGAAGTACACGCGCAAGGAGCACCTGGCCAACCACATGCGCTCCCACAGCGGGGACACGCCCTTCAGATGTGAGACATGCCACAAGTCCTACTCCAGGAGGGAGCACTTCAACAATCACGTCATGTGGCACTCCGGTGAAACTCCCCATCGCTGTGACTTCTGCTCGAAGACCTTCACCCGCAAAGAGCACCTTCTAAACCACGTGAGGCAGCACACGGGCGAGTCCCCGCACCGCTGCGCCTACTGCTCCAAGTCCTTTACGCGGCGGGAGCACCTGGTGAACCACGTGCGCCAGCACACCGGGGAGACGCCCTTCCGCTGCACCTACTGCCCCAAGGCCTTCACCAGGAAGGACCACCTAATGAACCACATCCGGCAGCACACGGGGGAGTCCCCGCACAAGTGCACCTACTGCAGCAAGTCCTTCACGCGCAAGGAGCACCTCACCAACCACGTGAGGCAGCACACGGGCGAGTCCCCGCACCGCTGCGCCTACTGCTCCAAGTCCTTCACCAGGAAGGAGCATCTCACCAACCACGTCAGGAAACACACGGGGGAGACTCCCTTCTCATGCAGCTATTGCACAAAGGCCTTCAGCAGGAAGGAGCACCTTACCAACCACGTCAGGAAACACACGGGGGAGACTCCCTTCTCATGCAGCTATTGCACAAAGGCCTTCAGCAGGAAGGAGCACCTTACCAACCACCTCAGGAAACACACGGGGGAGACTCCATTCACGTGCACCTACTGCTCCAAGGCCTTCAGCAGGAAGGAACACCTCACCAACCACGTCAGGAAGCACACGGGGGAGACTCCCTTTGCCTGCAGCTACTGCAGCAAGGCCTTTGGCAGGAAGGAGCACCTTACCATCCACGTCAGGATACACACTGGGGAGACGCCCTACAGCTGCACCTACTGTACCAAGTCCTTCAGCCGCAAGGAGCATCTCACCAACCACATCAGGGAACACACGGGGGAGACGCCCTATAGCTGCACCTACTGCACCAAGTCCTTCAGCCGCAAGGAGCACTTGAACAACCACATCAGGAAGCATACGGGGGAGACTCCTTATAGCTGCACCTACTGCGTCAAGTCCTTCAGCAGGAAGGAGCATTTGACCAACCACATCAGGAAACACACGGGAGAGACTCCATTCAGCTGTACGTACTGCACCAAGTCCTTTGGGAGGAAGGAGCATCTCACCATTCATATCAGGAAGCACACGGGAGAGACGCCCTACAGCTGCACCTACTGCTCCAAGTCCTTCAGCCGCAAGGAGCACCTCAACAACCACATCAGGATCCACACTGGAGAGTCGCCGCACCGCTGTGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTGACCAACCATCTGCGGCAGCACACGGGCGACACGCCGCACTGCTGCAACGTATGCAGCAAGCCCTTCACGCGCAAGGAGCACCTCATCAACCACATGAGTCGCTCACACACCGGTGAGCGTCCGTTTGCCTGCGAGGAGTGCGGCAAGTCCTTCCCCCTCAAGGGCAACCTGCTGTTCCACCAGCGCTCCCACAACAAGGGCTCGCAGGCGGAGAGGCCCTACCGCTGCGACCTCTGCCCCAAGGACTTCATGTGCAAAGGTCACCTAGTATCCCACCGGCGCTCCCACACGGGCGAGCGGCCCCACTCGTGCGAGCAGTGCGGCAAGACATTCGTGGAGAAGGGCAACATGCTGCGACACGTCCGCAAGCACGAAGCCGAAGGGGGAGTCGTGGTGGAAGAAGTGGTGCAGGCTGTTGTCCCCCCGGCGGCCGCGGCCATGCAGGGACAGGTGATCGCTATGCCGCACATGAAGACCTGCGACCAGCACAAGGACATGCATGAGGTGGAGGGGACGGTAGGGGGGCAGGAGGGAGAAGCCAGCGCGCCCCTGCCTCTCATGCACATGACGGGACAGGTGATAACTGAAGCAGCGGCAGCGGTGGCCCAGAGAGCAGCGGCCGTCCTCAGCCATCACCAGGCACAgcaacaacagcagcagcagcaacaacagcaacaacagcagcagcagcaacaacaaGCAACAATGCCACACCACCCTGTGGTTGTCAACTACTAG
Protein Sequence
MDPLEIKPLFILNPVEIKPSFTTPDGKTTFLTNVTDPKAFITTSDGKTTFLTNPPEIKSAFITNTSSSGVVSEIKSTFITNPPELKSPFIINTTEIKPLVDAAAYICSDLLLIPKPKSETPHHCQVCGKKYTRKEHLANHMRSHSGDTPFRCETCHKSYSRREHFNNHVMWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRREHLVNHVRQHTGETPFRCTYCPKAFTRKDHLMNHIRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGESPHRCAYCSKSFTRKEHLTNHVRKHTGETPFSCSYCTKAFSRKEHLTNHVRKHTGETPFSCSYCTKAFSRKEHLTNHLRKHTGETPFTCTYCSKAFSRKEHLTNHVRKHTGETPFACSYCSKAFGRKEHLTIHVRIHTGETPYSCTYCTKSFSRKEHLTNHIREHTGETPYSCTYCTKSFSRKEHLNNHIRKHTGETPYSCTYCVKSFSRKEHLTNHIRKHTGETPFSCTYCTKSFGRKEHLTIHIRKHTGETPYSCTYCSKSFSRKEHLNNHIRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGDTPHCCNVCSKPFTRKEHLINHMSRSHTGERPFACEECGKSFPLKGNLLFHQRSHNKGSQAERPYRCDLCPKDFMCKGHLVSHRRSHTGERPHSCEQCGKTFVEKGNMLRHVRKHEAEGGVVVEEVVQAVVPPAAAAMQGQVIAMPHMKTCDQHKDMHEVEGTVGGQEGEASAPLPLMHMTGQVITEAAAAVAQRAAAVLSHHQAQQQQQQQQQQQQQQQQQQQATMPHHPVVVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-