Afus023119.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637362.1:9181240-9184500[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-10 1.6e-07 31.4 0.0 5 35 15 46 13 56 0.91 2 2 0.78 2.6e+02 1.9 0.0 33 43 166 176 165 178 0.89
Sequence Information
- Coding Sequence
- atggaggagaagaaaaAGAAAGGAAAATGGGACCAACAAGGTTTGCAAACTGCTTTGAATAAAGTTTTGTCCAAAGACATGAGTCTAAGAGAAGCATCATTACGTTATGGCATCCCAAAGAGCACCATCTACGACAAAATATCTGCTTTGAAACGCGGAGAAGAAGTGGAGTTGGTACCAAAAATCGGCAGATTTAAAAATACCTTCTCACCAGAGTACGAACAAGTTCTAGTCGACCATATAAAAGAGGAGCACGAAGAGGAGTGGATAAAATGTCCCAGCTGGGTGGAGTGTGCTCATGAAGCATGTGTGGGCATTCCTGAATGTGGAGATGACTACATTGTGCGATCGATGCACGATGTTCTCATAATGTCCGGCGCTAGGGGCTCGGCGATTATGGCTGCCACCTTCGGTCTGTCCCGCCACGGGAACCGCGTCATCCTGATGAAGGGCTACCGCTTCCAGAAGGAGCGCATCACGCCCAAGGGGCACATCCTGTGGCGCTGCGTGAAGAGGCACCTCACGCACTGCCGCGCCAAGATCTACACCTTCAACGAGCTCATCGTCAAGTCCATGACTGTCCACAACCACTGTCCTCAGTACAACAACTAA
- Protein Sequence
- MEEKKKKGKWDQQGLQTALNKVLSKDMSLREASLRYGIPKSTIYDKISALKRGEEVELVPKIGRFKNTFSPEYEQVLVDHIKEEHEEEWIKCPSWVECAHEACVGIPECGDDYIVRSMHDVLIMSGARGSAIMAATFGLSRHGNRVILMKGYRFQKERITPKGHILWRCVKRHLTHCRAKIYTFNELIVKSMTVHNHCPQYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -