Afus020169.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637357.1:7308083-7314386[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-10 1.9e-07 31.2 0.0 4 39 188 224 185 228 0.90 2 4 7.8e-11 2.6e-08 33.9 0.1 4 39 242 277 239 280 0.91 3 4 4.3e-15 1.4e-12 47.6 0.0 2 45 295 339 294 339 0.97 4 4 6.8e-17 2.2e-14 53.3 0.0 1 42 346 388 346 389 0.95
Sequence Information
- Coding Sequence
- ATGACAGGTCACCCCGAGTCTGAGGAGGGCGGAGGCGCCGCGGAGAGCCCCACAGACGGCGGGGCTTCTCCAGACATGCACACTCTCTCTACAGCACGTCATCTGCACCAGCCCCTCATACAACATCTACAAAACGCAGAGGCTGACAGTGAAATCTCTTGCATAGAGTCAGAATACGCATTACCCGTCCCGATGGCCCCTTCTGCAACTCCTGTTCAAGTGTCCACTATTTCCATGGACCCTCAAGATCCCGTCTCACATCATCAAGGACCTACACACGGAAACAATCACTCTGAAGATGCCAAAGACAAGTTTGAAACGCTAAGGTCTCTTGACCAGAAAGTAACATTAGACATGGATAGACATATGAATCAACAGAATTCCAATAGAAAGATACATCCAACAATGATGATAACCTCTGAATTTTTGGGACTCATACCCGGAGAGCAGGATGTGAGCAACGAAGGACTAGGTGGCGAGGAGTGCAATGAGGATGGACTGGGTATTGGTGGACTGATGGCACATGGTTTGGGAAGTGGTCCGAAAACCTGGTCACAACAAGACATGGAAAACGCTTTGGATGCCCTGAGAAATCATAACATGAGCTTGACCAAAgcATCAGCAACTTTTGGTATACCCTCAACAACATTATGGCAGAGAGCTCATAGATTAGGCATAGACACTCCTAAAAAGGAAGGTCCTTCCAAGTCGTGGAGTGAAAGCAACTTACACAATGCTCTTCAGGCGTTGAGGACCGGGACTATATCTGCAAATAAAGCTAGTAAAGCATACGGAATTCCAAGTAGCACCTTATATAAAATTGCGAGGCGAGAAGGGATAAGATTAGCGGCACCGTTTAACGCGGCTCCCACGGCATGGAGACCCGGAGACTTGGAGAGAGCTCTGCACTCCATAAGATCTGGACACTCTTCAGTACAACGTGCGTCCACAGAGTTTGGGATACCAACTGgAACACTGTATGGAAGATGCAAGAGGGAGGGAATTGAACTCTCCCGTTCCAATCCTACTCCATGGTCTGAAGATGCTATGGGAGAAGCTTTAGAGGCTGTCAGaattggTCAGATGTCAATTAACCAAGCGGCCATCCATTACAACTTACCGTACTCGTCTCTGTATGGGAGGTTCAAGAGATGCAAGTACGAGGGAGACATTAGTGGAGGGCTGGAGCCTGTGGTGCAGATACAAGGGCATGTCAGTCAGGGACAGGAACAACATCACTCCCAACAGCAGCCGGCTGTCAGCGCCCACAACCACATTCCCTCACACGTCCTGAGCCCCGACCTCTCTCGCCACCACATGTACGCCGTGTACAACCACCCCCTGAGTCTGCCCATGCCGGTGCACGAGCACCCAGACGTCAGCATCACACACAATAACCAAGACTGCATCCCCATCAGTTGA
- Protein Sequence
- MTGHPESEEGGGAAESPTDGGASPDMHTLSTARHLHQPLIQHLQNAEADSEISCIESEYALPVPMAPSATPVQVSTISMDPQDPVSHHQGPTHGNNHSEDAKDKFETLRSLDQKVTLDMDRHMNQQNSNRKIHPTMMITSEFLGLIPGEQDVSNEGLGGEECNEDGLGIGGLMAHGLGSGPKTWSQQDMENALDALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSESNLHNALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGDISGGLEPVVQIQGHVSQGQEQHHSQQQPAVSAHNHIPSHVLSPDLSRHHMYAVYNHPLSLPMPVHEHPDVSITHNNQDCIPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -