Basic Information

Insect: Aethes cnicana
Gene Symbol: SCRT1
Assembly: GCA_963971205.1
Location: OZ020272.1:3898708-3908559[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9e-07 2.6e-05 25.0 1.7 1 23 1219 1241 1219 1241 0.99

2 5 0.0068 0.46 11.6 0.0 2 23 1251 1272 1250 1272 0.97

3 5 4.4e-05 0.003 18.6 0.2 1 23 1276 1298 1276 1298 0.97

4 5 1.8e-07 1.2e-05 26.1 0.6 3 23 1306 1326 1304 1326 0.98

5 5 0.00025 0.017 16.2 2.2 1 21 1332 1352 1332 1353 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9e-07	2.6e-05	25.0	1.7	1	23	1219	1241	1219	1241	0.99
2	5	0.0068	0.46	11.6	0.0	2	23	1251	1272	1250	1272	0.97
3	5	4.4e-05	0.003	18.6	0.2	1	23	1276	1298	1276	1298	0.97
4	5	1.8e-07	1.2e-05	26.1	0.6	3	23	1306	1326	1304	1326	0.98
5	5	0.00025	0.017	16.2	2.2	1	21	1332	1352	1332	1353	0.95

Sequence Information

Coding Sequence: ATGAGTCGTGAAGCATTTTCGAAGAATAAGGAAAAGCGGCCCAGAACATCGTCTGGAGAATCTAACAATTCGTTCGTGAAGAATGTGACGTCACGGGTGTCGGGCTACCTGCCCGCGACGATCACAAAGTGGTTCAGCAGCCCCCGCGCCACCGCCAACGGGTCGGCGCCGGCGGCCGACGCCACGGACTCGTCCACGGAGGACGAGGCCCCGGAGAGCCCTGTGACCGCCCAGCCACCAGCCAAGAGGATGAGATACACCTCGGCGAGCACAAATACAAACAGCGTCACAGTCATAAGCAACACAGAAACCACAGATATTTCACCGTCGTACAGCATCTCTTCGCCGCCGGCCCGGTCGACGTTCAGACGCGAAACCAGCTTCGCTTCTACCCCGATCAGGTCACCGGAGGAATCAGTCATCGAGCGAGAAGACAAGGAGACAATGTTCCCACAGCATACGGTCTCCGTCACGGGGCCCAGTGTTTCCAAGAAGCGGAAGACCCTATTCGGTGACCAGTCGCAGGAGATCAGTGAAGCGTCCAAGAAAGCATGCGTGAAAACGGCCAACAACGTGGCTCGGGACCCCCGGCAGCCGTGCTTCAAGCCCACCTTACTTGGCTCTCCGTTCTACGCCGGCCGGACCACATACGGCGGCGCCGCGTCGTCCTACATCAACCAGCCCAACATCACACACAGGCAGACAACAACGGTGCGGGAAGCTGCCAGCAACACGGACAACAACATCAGCCACTCAGCGAGGCGGGTCCTAGAGCTGCTGGAAAGCTACTCCTCGCCCCTGGCCGAGGCGAAGAGGATACCACAGTACAGCCGACCCACCAAACAGGAGATCGCAAAGCGGATATCAGATACATCGTTGGCGTCGCCTTACCAGAAAGTTATGTCGTACAAGACGCAAGAGCTCCACGTGCCAAGGATAGCGTCGATACTGCGGCTGAAGCAACGGTCGCGGTTGAACGACACCACGAACGCCGCTCGGCAGCTCATCGCGTCGCACAGCAGCTCATCGCCGGACTACCTAACGCACCCATACGGCACTAGGAGGGAACAAACTGGAACGGACACTAGCAACAAGCTAACAACTAAAGTGAAATCTAGACTCACCAGGCCAGCCCGGGGCGAATCCAACGCCCTCGAGACAGACACCGTCACCCCACCGGACCTACCCAAAGCCGTTCTACAGATCGACCCCAACAACCTACCCAAATTCAATAGCCCAATTCCACCTAAAACAAGCTCAACAGACAAACTAATAGCCAACAAAACGGAAGCTAAGAAATCCATAGAAACAATAAGTAAACCTGTAACCGTTAGTAGTAATAGTATTTATAATTTCTCAAACCCCGTCAGTGTAACCAGTGAATCTCCTAAAGCGACGTCGACGCCGCCTAAATTCACGTTCGGCAGCCCAGAGCGGAGTATAGAGACCGCGGGCGGGAGCAAAGCGCCGGAACCACCGAAACCTTTAGTTAATAAGGAAGTAGAGAAAAAGACGACCACTGAGTCCGCCAACTGGCAGTGCCCAGACTGCTGGGTCAGTAACAAAGCTGATGTCGATAAATGCGTCTGTTGCGGATACAAGAACGCTCCAAAGCCTGCCAGCAAAGCGAAATGCTCCCTCTGCAAACTGGCCGACAGCCAGGCCGACTCTGATAAATGCGTCAACTGCGGCAAAGTACAAGTGAACAATATCAACAAACCGCTCAAAGTTGATACGTCTAAATGGAAGTGCCAAGACTGCTGGGTGGAGAATAATGAAACGGCCGACAAGTGCGTCTGCTGCGGCGCCAAGAACCCGAAAGCGGCTGCTCCAACGGTCCCCGCGAAGAAACCCGAAGTCGGAGGAATGTGTCCCAAGTGTTTCGCCGCGATGAGTCTCGGCAAGTGCAGCAAGTGCGAGTCTACCACAAAACCGGCTAATTCTCTAGAAGCCGTTATAAAATCACAAGCCAATAAATGGGAGTGTGAACACTGCTTGGTTAAAAACGAAACCACCAAGTCCAAATGTGTCTGCTGCGGAGCAGACAGGTCGGGCCAAACGAAGGAACCCGAGGTAAACAAATTCAATTTCGGGACTGGTATCAACACTTTCAAATTCGGTATCGATCTGAAAGTCCAAGAAGCCAACCTAGCGAAAGCGGCCGAGGCGCCCGCGGAGAAAAAAGATAAAGTGGAGGAATCGGAAACAAATAACAACGTCCTTTCGAAGGCGCCGACTTTCTCGTTCGGCATACCGGCGAAGAAACCCGAAGACGAAACGGACTCTGGCAAAGAAAAGAAAGAGCTGGAAGCTCCTAAACCCACCTTTTCATTTGGTATACCTAAGCAGAACTCGGTGGCACCTACGCCGGCTCCGCTCTTTACCTTCTCAAACAAAGTAAACGACACTTCTAAAACCGACGCTGAAGTCAAAGATAAACCGCAAGAAGCTAAGAAGCCTGACGAAGCTCCGAAGCGACAGACGGTAATATTTGGAGCGGCGTCTGCGCCGACAAGCACCACAGCTAGTCAATCTGTTTCCGTGACGGCCTTCGCTCTAGACAAGAAAGCGGCGCCGAGCAACGCTCTCAGCATGCCCGCGACGAGCGCGGAGGCCGCTCCCACGCTGAGTCTGTCGAGCTCGAAGCCTGGAGGCATCGGCCTATTCGCCTCCCCAACTAGTGTAGCTTTTAATCCAACGACCACCCCGGCTTCTTCGGCGAGTTTATTCCAAAAGACTGACGACACGAGCAAGACATTGTCGATGTTCCAAAAGAGCGAGTCGACCGCGCCGGCGGGATCGTCGGCGCCCGCGTCGCTGTTCCAGAAGGCCGAGGCGCCGGCCGCGGCCCCGGCCCCCGTGCCGGCCCCGGTGCCGGCTCCGGCCGCCCCCGCCGCGCCCATGTTCAGCTTCGGCAGCGCGACGGCCTCGCAGCCGCAACCCGACAAACCAAAGTTCAACTTCACCTTCGGCGCCAACAAAACTGACAACGTGTTCAAACCGCCCACCTTCGGAGCGCCCACTGACAGCAGCGCCCCTAAATTCTCTCTCGGAAACAATGCCACTGGAAACCCACTGGCGACTGTGAATCCGTTGGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCCCGCCCAAGAAGAAGGACATCTACCGGCCGTACTGCCTCGAGAATCGCGCCGCGCACCTCCACCGCGCCGAGGAAGACCTGAATGCGGCCCACGCTATCCTAGACCTGAGCCAGCACGCCGTGTTCCTGACTAGCCCGCCGCGCGCCGAGCCTGCGCCCCCCGaaccaccgccgccgccgccgccgcccgagcCGCCCGCCGAGGACCCCGGCCCCGAGAAGCCCCGCGAGACGGTCGCCTACACCTACGACGCGTTCTTCGTCAGCGACGGCCGCTCCAAGCGCCGCAACTACGTCAACTCGCCCGTGGAGGCCGCGCCGCAGCCCGAGCCCAAGTCTAAATACACCTGCAGCGAGTGCGGCAAGCGGTACGCGACGTCCTCCAACCTGTCGCGGCACAAGCAGACGCACCGCAGCCTGGACTCGGTGTCGGCCAAGCGCTGCGGCGAGTGCGGCAAAGCGTACGTGTCGATGCCGGCGCTGGCCATGCACGTGCTGACGCACCAACTGTCGCACGTGTGCGGCGTGTGCGGTAAGCTGTTCTCGCGGCCATGGCTGCTGCAGGGCCACCTGCGGTCGCACACCGGCGAGAAGCCTTACGGCTGCGCGCACTGCGGTAAAGCCTTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAAACGCACTCCTCCGACAAGAACTTCGAGTGCACGCGCTGCCACAAGACATTCGCGCTCAAGAGCTACCTCAACAAGCACCAGGAGTCGGCGTGCGTGCGCGACGACGACTCCCCGCAGCCCGCGCCAGCGCCCGAGTCGGGCTAg
Protein Sequence: MSREAFSKNKEKRPRTSSGESNNSFVKNVTSRVSGYLPATITKWFSSPRATANGSAPAADATDSSTEDEAPESPVTAQPPAKRMRYTSASTNTNSVTVISNTETTDISPSYSISSPPARSTFRRETSFASTPIRSPEESVIEREDKETMFPQHTVSVTGPSVSKKRKTLFGDQSQEISEASKKACVKTANNVARDPRQPCFKPTLLGSPFYAGRTTYGGAASSYINQPNITHRQTTTVREAASNTDNNISHSARRVLELLESYSSPLAEAKRIPQYSRPTKQEIAKRISDTSLASPYQKVMSYKTQELHVPRIASILRLKQRSRLNDTTNAARQLIASHSSSSPDYLTHPYGTRREQTGTDTSNKLTTKVKSRLTRPARGESNALETDTVTPPDLPKAVLQIDPNNLPKFNSPIPPKTSSTDKLIANKTEAKKSIETISKPVTVSSNSIYNFSNPVSVTSESPKATSTPPKFTFGSPERSIETAGGSKAPEPPKPLVNKEVEKKTTTESANWQCPDCWVSNKADVDKCVCCGYKNAPKPASKAKCSLCKLADSQADSDKCVNCGKVQVNNINKPLKVDTSKWKCQDCWVENNETADKCVCCGAKNPKAAAPTVPAKKPEVGGMCPKCFAAMSLGKCSKCESTTKPANSLEAVIKSQANKWECEHCLVKNETTKSKCVCCGADRSGQTKEPEVNKFNFGTGINTFKFGIDLKVQEANLAKAAEAPAEKKDKVEESETNNNVLSKAPTFSFGIPAKKPEDETDSGKEKKELEAPKPTFSFGIPKQNSVAPTPAPLFTFSNKVNDTSKTDAEVKDKPQEAKKPDEAPKRQTVIFGAASAPTSTTASQSVSVTAFALDKKAAPSNALSMPATSAEAAPTLSLSSSKPGGIGLFASPTSVAFNPTTTPASSASLFQKTDDTSKTLSMFQKSESTAPAGSSAPASLFQKAEAPAAAPAPVPAPVPAPAAPAAPMFSFGSATASQPQPDKPKFNFTFGANKTDNVFKPPTFGAPTDSSAPKFSLGNNATGNPLATVNPLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLPPKKKDIYRPYCLENRAAHLHRAEEDLNAAHAILDLSQHAVFLTSPPRAEPAPPEPPPPPPPPEPPAEDPGPEKPRETVAYTYDAFFVSDGRSKRRNYVNSPVEAAPQPEPKSKYTCSECGKRYATSSNLSRHKQTHRSLDSVSAKRCGECGKAYVSMPALAMHVLTHQLSHVCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFECTRCHKTFALKSYLNKHQESACVRDDDSPQPAPAPESG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -