Basic Information

Insect: Aethes cnicana
Gene Symbol: RREB1
Assembly: GCA_963971205.1
Location: OZ020293.1:5289030-5303797[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.01 0.7 11.1 0.3 1 23 94 117 94 117 0.94

2 11 0.025 1.7 9.9 0.1 1 23 308 330 308 330 0.97

3 11 0.0014 0.092 13.9 0.4 1 23 339 361 339 361 0.99

4 11 0.00084 0.057 14.5 2.0 1 23 367 390 367 390 0.97

5 11 0.0034 0.23 12.6 1.6 1 23 734 757 734 757 0.96

6 11 0.00028 0.019 16.0 1.3 2 23 949 970 948 970 0.97

7 11 0.029 2 9.7 5.3 1 23 976 999 976 999 0.97

8 11 0.065 4.4 8.6 1.3 1 23 1030 1054 1030 1054 0.91

9 11 0.024 1.6 9.9 0.3 1 23 1078 1101 1078 1101 0.92

10 11 0.0021 0.14 13.3 0.2 2 23 1141 1162 1140 1162 0.96

11 11 0.032 2.2 9.5 5.3 1 23 1168 1190 1168 1190 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.01	0.7	11.1	0.3	1	23	94	117	94	117	0.94
2	11	0.025	1.7	9.9	0.1	1	23	308	330	308	330	0.97
3	11	0.0014	0.092	13.9	0.4	1	23	339	361	339	361	0.99
4	11	0.00084	0.057	14.5	2.0	1	23	367	390	367	390	0.97
5	11	0.0034	0.23	12.6	1.6	1	23	734	757	734	757	0.96
6	11	0.00028	0.019	16.0	1.3	2	23	949	970	948	970	0.97
7	11	0.029	2	9.7	5.3	1	23	976	999	976	999	0.97
8	11	0.065	4.4	8.6	1.3	1	23	1030	1054	1030	1054	0.91
9	11	0.024	1.6	9.9	0.3	1	23	1078	1101	1078	1101	0.92
10	11	0.0021	0.14	13.3	0.2	2	23	1141	1162	1140	1162	0.96
11	11	0.032	2.2	9.5	5.3	1	23	1168	1190	1168	1190	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCGGCCAGCGCACCTGCGGCCTCCGCCGCCGAGCCACCGGCCTCTCAACAAATCAAAACAGAGGAGGTTATCAGCGAAGCAAAGATCGAGGCCAACCACGAAGATATGCAAGAAATGAGGGAAAAGCAGGAGCCTAGAGTGACGCGGACGACGAGCATCGACAGCGACAACCGTTCTGACAGAAGCGAAGAGGAAGATTCTAGAAGAGCCCGCAAGAGGGCGGCGTCCACGTCGCCCTCGCCAATGCCGCTGGACAAGAGGTTTGCTCGGTTCGAGTGCCCTAAATGCGGCCAGCGTTTCGACTCCGTCAACGCCTTCGATCTCCACAGATTCACCGCTCACGGCGACGAGACGCGAGGCTTCAACGATCTCACCTTCGTGGATTTCTCCAGCAAGAAGTTCCCCGAAATAGCACGGGGCGTGTGCGAACGCAACCCGCACGTATCAATAGCAGAGCAACGGTACAGATGCGAAATGTGCTTCAGGGACTTCCCATGTGGACAGGCTTTAGACATCCATCGAAAAACATGTGCCAACCCCGTTAGGGTACAGAGCCCAGAGCGCGGTGACCGTCGAGAAGACTTTTTTGCTAAACTGGACTTGAGGAACAGAACTTATGGCATCCCCGGTACACTGACCCCGCCCATGGAACGCTTCGCATCCAAATTCGATGATGCTCATTTCCCTGGCAACGGAATCAGACATATGGATGCCGCAAGAGACTTGGCTGATATCCAGTCAATTTTACACGTGACGTCAACAGGAAGCCTCTTGGAAAGACTCACTGGCACCAGAGTTCCTTTGGAAAGTACTGTTCTGACACCTCCCGATACAGTTGGCAAGGAGAGGGAGCAAGAGGAAACGCAAGATAATTTCGCGGCTGAGTTTAGGAGAATGAAACTCCGCGGCGAATTCCCATGCAGATTGTGCCCTGCAAAGTTTCCTAACCTGAGAGCTCTGAAAGGCCATAATAGGGTGCATCTTAGTGGGACCGGACCTGGGCCTTATCAGTGTAACATGTGCCCACATGCATCTCTGGACAAGGCGGCTTTGGTCAGACACATGCGCACTCACAACGGAGATCGTCCTTACGAATGCGCTGTCTGCAACTACGCTTTCACTACGAAGGCGAACTGTGAACGTCATCTGCGCAACCGTCACGCCAAAGTCACCAGAGAAGACGTCAAGCGGTCTATCATATATCATCCCTCAGAGGATCCCAACAACGATGAAGTCAACTCTAAATTGGCGCGAGAAGAAGTCAAGAGGTCCCTGGCCTTCCATACACCCGAACCTGAACGACGCACTGAGCCCACCGGTCGCGATACCCCCTTATCCCACTTCACACCTAGTTTCATCACCGACCGACATCCTGTCGCTGCGTTGACCCCAAAACCTTTAGTGGATATTCCCGTTATACCTAGAGACCCCGAGCCTCCAGCGCCAAGGATCAAAGTGAAAGGTATCGGGCAGTTGACGCAGATACCTGAATACCGGCCACCAGAATTTTCAACCAAAAGCAACGGTGAAATCGACAGTTACGATGCAGATGCTCCGGTTGATCTGAGTACTAGCGACAACAACTGTGACGCTCTTGATCTTAGCAAGAAGAAGCGTGATGTGGATGAAGACGATGAACCCAAGTCAATTCCACGACCGACTTTCGAGCCTGATCCGGCCGTCACCGCATCTGCATACGAAAAAACTAGATTCCTGCTAGCTCAACAGAGACTGTTCGAGAACTCGATTCCCAAAATCGATCCGTCATACTACGCAACTCAACTATCTCAACTATACGCTGGAGCCGTACCAGGGCTTCCTGGCATTGGTTTGCCTCCGACTTTCCCACTCAACCCTTATTTTCTTCAACCCTCTATTTTTCCCCACCCGTCCGACTCCCAAGAACTGGCCGAAATAAAGCAGCGCATCCAAAAGGAAATAATTCGTGGCCTGAGCATGTCTGGAGGTAGACTCGTAACTGGTGAACCAGAGCCCCAGCCTAAGCAGGAGCCAGAAGAAGAAGACCAGCCCATGATGCGCGATAGTTCCCCAATACCTCCTCGCTCAGAATCTCCCCCGCGGCCGTTGACCAATGGCCTCATTCAGCAGAACGACTCAGTCAAAATGGTCATTAAAAATGGTGTGCTGATGCCTAAGCAGAAGCAAAGGCGCTATCGCACGGAACGACCATTCTCTTGCTCTCAATGCTCGGCTCGCTTTACGCTGCGCTCGAATATGGAACGGCACGTGAAACAGCAACATCCTCAGCATTGGAGTGTTAGGCGGCCGTCGCCGCGCGCGCCTCCGCCGTACCCTTCTTCTGATACTTTAGCGGATCGTGTGAAGTTCGCACTTTTAGCTCGACACCTCGAGCGGCCAATCCAACAAGAACGATCACCAGTTAGGCGAGACTCCGACGAGGTCGCTGACAACGAGGAAGACGAAGACGACACTCTAGTTATAGACGAGGAACCGGAACCTGACGTTAAATCAGAACAGCACCCCGCGGCGCACCGGGCTGCAGAAGAAATCCTCATGGCATCCCGTCAACAGGAGCACAAGGACTTTGATCTCAAAATCGCCGGGAACCTCATCAACAAGCCAGTTCCTATAACAGAGAAGACTGAAACAGGAACCGACCCCATCCCGGTTCCCGAACCTTTGGTTGTACCAGTAGTACCGACCAGGAGCGATGAGGAAGAAGATGAAGAGGGACTGGTGGCTTCTACGAGTGAAGGGAACATCTCCGGGAGTGATGAAAACAAATCGGAATCGGACACTGGAACGCAACCACCGAAAAAGAAGTCTGCCTACAGTCTCGCTCCAAACCGAGTATCCTGCCCTTACTGCCACCGGAAATTCCCGTGGTCCTCTTCCCTCCGTCGCCACGTGCTCACGCACACCGGCCAGAAGCCCTTCAAATGCCCGCACTGCCCTTTGCTCTTCACCACAAAATCCAACTGCGACCGCCATCTCTTAAGAAAGCACGGAGGATCAGCGAGAGCTATACTAACGGAACCTATCCCCGAGGCCGTATCTCCCCCGCAAAATGACATCAGAAATGTCCCGGAAAGACCATTCAAGTGCGCCTCTTGTCCAACCAGCACCTTCTCATCACTGGACACTTTGAAGAAGCACATGTCTTCTAGACACGGGACGAGTGATTCGCAGCCTGCTTCTCCAAACCCTGATGTTGAGGATATGTCGAACGGCGACCTAGCTTTCAAGTGCCATTTGTGCGAGGCTTCCTTTGGTGATCGGAGTGGAGCGTTGCGGCATCTGGCTGGCACGCACACGACGGAATATGACCAACTTGTCAGCAAGGGTGCCTTGGACGCGGCGAGCGACCGGAGTGAAAGCGCTGACGACGATGAGAAGGGGAAGTTTCCTGATCATGCTAATCGAAAAGTTGTCTGCGCATTCTGTGTCCGTCGGTTCTGGTCGGCGGAGGACTTGCGGCGTCACATGAGGACTCACTCCGGCGAGCGTCCGTTCGCCTGCGACCTGTGTCGGCGGAGATTCACGCTCAAACACAGCATGCTGCGCCATCGGAAGAAGCATAGAGACGAAACGGACGATGAAGAGGCGACGCCGCCTGACACGCCTCTTGAGAGAGATGCTGTCACCAACGGATACAGCTACCACGATGACGACGGCTCCGGCAACGAGATCCCGAGCAACGTCAACAACAACAACTCTCCCCCCTCCTCCCACTACGACAAGAAACTCAAAATACAGATGACCTCGCGGAAATACTCGTCCGAAACCGAGAACGAGGGGGAAAACGGGGGCGATCTCATCGGGAAACTTCTCGGCATACCCGACAAGACTATAATCAACAAGCTGCTGTCATCCGCAGATGAGGCCGCAAAGTTCCTAGGAGTCAACAAATGA
Protein Sequence: MQGAASAPAASAAEPPASQQIKTEEVISEAKIEANHEDMQEMREKQEPRVTRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPMPLDKRFARFECPKCGQRFDSVNAFDLHRFTAHGDETRGFNDLTFVDFSSKKFPEIARGVCERNPHVSIAEQRYRCEMCFRDFPCGQALDIHRKTCANPVRVQSPERGDRREDFFAKLDLRNRTYGIPGTLTPPMERFASKFDDAHFPGNGIRHMDAARDLADIQSILHVTSTGSLLERLTGTRVPLESTVLTPPDTVGKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEPERRTEPTGRDTPLSHFTPSFITDRHPVAALTPKPLVDIPVIPRDPEPPAPRIKVKGIGQLTQIPEYRPPEFSTKSNGEIDSYDADAPVDLSTSDNNCDALDLSKKKRDVDEDDEPKSIPRPTFEPDPAVTASAYEKTRFLLAQQRLFENSIPKIDPSYYATQLSQLYAGAVPGLPGIGLPPTFPLNPYFLQPSIFPHPSDSQELAEIKQRIQKEIIRGLSMSGGRLVTGEPEPQPKQEPEEEDQPMMRDSSPIPPRSESPPRPLTNGLIQQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPSSDTLADRVKFALLARHLERPIQQERSPVRRDSDEVADNEEDEDDTLVIDEEPEPDVKSEQHPAAHRAAEEILMASRQQEHKDFDLKIAGNLINKPVPITEKTETGTDPIPVPEPLVVPVVPTRSDEEEDEEGLVASTSEGNISGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILTEPIPEAVSPPQNDIRNVPERPFKCASCPTSTFSSLDTLKKHMSSRHGTSDSQPASPNPDVEDMSNGDLAFKCHLCEASFGDRSGALRHLAGTHTTEYDQLVSKGALDAASDRSESADDDEKGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDETDDEEATPPDTPLERDAVTNGYSYHDDDGSGNEIPSNVNNNNSPPSSHYDKKLKIQMTSRKYSSETENEGENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00773242;
90% Identity: iTF_00773242;
80% Identity: -